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ET14305

CSHL Arabidopsis genetrap mutant lines

Original: ET14305

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14305

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71714 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET14305 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTTA GGACGGACAC 
    AGTATTTGCG AGGATTGGTT GTTTTAACCT GTGTGTCTCT CAATTAACAT 
    CAACACTCTC TCAATGTGTA CTAATAAGAC AGAATTGTAA GAAGAGAATG 
    TAAAAGACCT TAAAAGCGAC ACATTGAGTA GTTGTCTTGT TGGTCAATTG 
    CATCGAACAC GAACTTTGTT TCTTCATCTC ACTCGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71650 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET14305 - 5-prime edge 
    TCCTACTTTC TCCCTGGTCC TAACACTGGT GTTGTCTTGC CCGGTGATTC 
    CTGCAATGTT ACAGGTTCTT AAAACCATTT CTTCTTTCAT TCAAAAGCTT 
    TGGTTTTTTT TAGTCAACAA CACAAAAGAT GATTGTTGTT TTGTTTCAGT 
    GACGATGCAA GCCCAGAAAG AGGCACCACT TGATATGCAA TGCAAAGACA 
    AGTTCCTTGT TCAGACTGTT GTTGTCTCTG ATGGTACTAC TTCCAAAGAA 
    GTCCTCGCTG AAATGGTTTG CACTCTATAT GCTTTTTTAA AAAGG

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR