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ET14179

CSHL Arabidopsis genetrap mutant lines

Original: ET14179

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14179

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8145175 [Map]; Strand: c
      • AT5G24090.1 - [+] show detail - chitinase A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET14179 - 3-prime edge 
    TAACATGCTT GCGAAGAGTC ATGTTAGTCA TGTTTTTGGT TAAAGATGTT 
    TTGTCTTCTT TGTGGTTATG TGTTTGTTTG TTATTGCTTA ACTTCTTTTT 
    TATAAAAGAA GTAAAAGATG ACTTTTGTTT GCTTTAATTT TTATATCTTA 
    TCTATGTATG TTATAATGTC TCTCACACAC ATTGCATGAC TTTGATTGGT 
    TGTTTTTTTC TTTCTTCAAA TAATATAGCT TTCCTACTTA AACTAGATAT 
    AAATCTCAAA CATTAAGAAG CCATCTAGAA TCTCTTACCA CTATGTAATT 
    GTGTATAAAG AAAAAATAAA TTTCAAAAAA AAAAAAAAAA TTGGGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8144749 [Map]; Strand: c
      • AT5G24090.1 - [+] show detail - chitinase A
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET14179 - 5-prime edge 
    ATTACTTAAT TAACTACTCT GTATCATAGC TGCTGAAAGG TTAAACTCTG 
    TATCAAATAT TCATCTCACT CGACAATCNA TAATTTAGTT AGCTACCTTG 
    AAATGACATT TGTTTTGATA CTTATGTCAA AATTGTTATA AGGTTATGTT 
    GTCTCTCGGC GGCGGGATTG GAAACTACTC GATTGGGTCG AGGGAGGACG 
    CAAAAGTTAT CGCTGATTAT CTGTGGAACA ACTTCTTGGG AGGAAAATCA 
    TCATCACGTC CCTTAGGTGA TGCTGTTCTA GATGGTATCG ATTTCAATAT 
    CGAGCTTGGC TCTCCTCAAC ACTGGGATGA TCTCGCCAGG GAGTAGTATA 
    AATGTATAAT TAAGAAAACA TTTTGAATAA AT

AT5G24090.1

Model type
Protein coding
Short Description
chitinase A
Curator Summary
Chitinase A (class III) expressed exclusively under environmental stress conditions.
Computational Description
chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR