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ET14086

CSHL Arabidopsis genetrap mutant lines

Original: ET14086

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14086

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET14086 - 3-prime edge 
    GGGGGGGGGG GGGGGGGGGG AGAGGGGGGG G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18079 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET14086 - 5-prime edge 
    ATCCTACTTT ATCCCTGCTA CGATTAGACT ACGAGGTAGC CGAGCTGACG 
    TGGGAGAACG GGCAACTAGG CTTGCACGGC TTACGTCCAC CGCGAGTGAC 
    GGCTTCGTCG ACCAAGTACT CCACAGGCGC CGGTGGAACG TTAGAGTCGA 
    TAGTGGACCA AGCTACTCGC CTCCCTAACC CTAAGCCCAC GGATGAGCTC 
    GTCCCGTGGT TCCATCATCG CTCCTCCAGG GCCGCGATGG CAATGGACGC 
    GCTTGTCCCT TGCTCCAACC TAG

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR