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ET14018

CSHL Arabidopsis genetrap mutant lines

Original: ET14018

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14018

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78376 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2992; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2057; Region: intergenic
    Flanking Genome Sequence: ET14018 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTAAT 
    GAAACTAAAG AGAGACATAT ACACGTGCAT ATATACACTC AGATGTTGAT 
    TGTTTTCCAA GGTGTTTGTG TGAGAAATGA CATCTCTCTC TCTCACCCAT 
    TCAGGCGGTG GAAAAATTCA ATAACACTTT TAAAAAAGAT TTTTGTTCAA 
    TAGGTTTNTG ACCTGAAAAT ACTTAGAACA AAAAATAACA CAAGAGGGAA 
    AGTGCCGTAA AAGTAAAAAA AAAGAAAAAA AGAGAGAGAT CATGTCGCTG 
    ACATACTATA CATGCCTAGC TAGCTCGGTA CATTTATATA TAATGTTTGT 
    GTGTAAGGTA GATTGAGATA TATGAATGGT CAAATCGGAA ATAAAACAGT 
    ATATGTTCTT AAATAAGCTT CTCCTTTGTT CAACTTTTTT GCTTTCTTTC 
    CCGTTACATG ATTTCGCGAT TAATTACTTT TTATAATTAG TCAACTTCGA 
    CGCCTTGTGT CGTCCTCGAT TTTAATGTTC TGTCTTTCTC TGCATTCATA 
    GTTTATCTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78381 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2997; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2052; Region: intergenic
    Flanking Genome Sequence: ET14018 - 3-prime edge 
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAT 
    TAACCACTAC ATCATCTCTT CCTCTCATTT CCTTCATACC TTTAACAGTT 
    TTCTCAGCTT CAATCCTTTT CGTCTCCGCT ACAGCTAAAA GCCCTTTGAG 
    CCCCTCAATG CTCGGCTCTA TAGACATTAT TTTTCTGCTC AAGATCAATG 
    TTCTCCTCGC TCGACCAAGA AAATACTTAG AACAAAAAAT AACACAAGAG 
    GGAAAGTGCC GTAAAAGTAA AAAAAAAGAA AAAAAGAGAG AGATCATGTC 
    GCTGACATAC TATACATGCC TAGCTAGCTC GGTACATTTA TATATAATGT 
    TTGTGTGTAA GGTAGATTGA GATATATGAA TGGTCAAATC GGAAATAAAA 
    CAGTATATGT TCTTAAATAA GCTTCTCCTT TGTTCAACTT TTTTGCTTTC 
    ATTTCCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78463 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -3079; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 1970; Region: intergenic
    Flanking Genome Sequence: ET14018 - 5-prime edge 
    TTTCGAGCCA CTTATCTTCG CCGTGCCACC GTTTTGCATA ACACTTGACA 
    TCACATCTTT TCAAGACCTC TAACAAACCA GAACTACTTT ACATAGGGGA 
    GGGAATAACA TATTTCAAAC TTGTTCATTT TATTCAATAT ATATTAATTG 
    CTAATTAGTT T

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR