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ET13991

CSHL Arabidopsis genetrap mutant lines

Original: ET13991

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13991

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22058053 [Map]; Strand: w
      • AT3G59710.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -897; Region: promoter
    Flanking Genome Sequence: ET13991 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAA 
    ATGACTTGGT AAGATTCCGT ATTGATAAAG ACCGATAAAC CATCTCCAAC 
    ACCTATATCA CGTACAATTC TCCAATAGGC CATGCATCAA CTGTGGCGGC 
    AAAGCTGACT ACATATTATA TTATGCTTGA TAAATTTAAA CTTTATGAAT 
    TAATAAGCCC AATGATGAAG CAAGCACATG CCTAAATCTC ACTAACTCTC 
    ATATATGTCA TAAAGAACTT TGAAGTTTTT AAACTAAGTA ATTGTTTATA 
    CAAAACCAAG TAGACATAAT GTTATGTCTA AACTGAATGG GTTTTCTTAA 
    TTGAAGCATG CAAGGCATTT AAACAATTAA CTAAAGGCTC TTAGTCAATA 
    CTAATCTACT CCTTTTTTCT TCTAGACCAC TGCAATAATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21234198 [Map]; Strand: c
      • AT1G56650.1 - [+] show detail - production of anthocyanin pigment 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET13991 - 5-prime edge 
    CGGAGAGTGC GTCATTAGTT TAATACTAAT AACATATGTA TATTTTCTTA 
    CAATTGTTAG GTGGTCTTTA ATTGCTGGAA GATTGCCTGG TCGGACCGCA 
    AATGACGTCA AGAATTACTG GAACACTCAT CTGAGTAAGA AACATGAACC 
    GTGTTGTAAG ATAAAGATGA AAAAGAGAGA CATTACGCCC ATTCCTACAA 
    CACCGGCACT AAAAACCAAT GTTTATAAGC CTCGACCTCG ATCCTTCTCA 
    GGTAACAACG ACTGCAACCA TCTCAATGCC CCACCAAAAG TTGATGTTAA 
    TCCTCCATGC CTTGGACTTA ACACCAATAA TGTTTGTGAC AATAATATCA 
    TATACAACAA AGATAAGAAG AAAGACCAAC TAGTGAATAA TTTGATTGAT 
    GGAGATAATA TGTGGTTAGA GAAATTCCTA GAGGAAAGCC AAGAGGTAGA 
    TATGTTGGTT CCTGAAACGA CGACAACAGA AAAAGGGGAC ACCTTGGCTT 
    TTGACGTTGA TCAACTTTGG AGTCTT

AT1G56650.1

Model type
Protein coding
Short Description
production of anthocyanin pigment 1
Curator Summary
Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.
Computational Description
production of anthocyanin pigment 1 (PAP1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 90 (TAIR:AT1G66390.1); Has 8761 Blast hits to 8206 proteins in 539 species: Archae - 0; Bacteria - 0; Metazoa - 765; Fungi - 472; Plants - 5883; Viruses - 3; Other Eukaryotes - 1638 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59710.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G51030.1); Has 60289 Blast hits to 60264 proteins in 3086 species: Archae - 599; Bacteria - 42094; Metazoa - 4067; Fungi - 2569; Plants - 1993; Viruses - 0; Other Eukaryotes - 8967 (source: NCBI BLink).
Link
InterPro Scan - TAIR