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ET13965

CSHL Arabidopsis genetrap mutant lines

Original: ET13965

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13965

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 58458 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13965 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC TCTCTCGACC 
    ACTATGACCT CTGCTGCCTT AACCAGCTGC TCTGTTATCC CCACGGGACC 
    AGGGTTGAGC CGCTTTGCCG GCGGAGGTGT ATGGTGGTGG TGGCCGTAGA 
    AGATAGCCGC AGGATTCTGT GTGTAGTGGG TTTGACTTTG GTTGATCAGA 
    AGACCGGAAA CATGTGACGG CGGAACAGAG TGGTAGTCTA AACCGAAGCC 
    GGTGTCGACG ACTCCGAAAC CGGGTGATGA GTAGTCAGAG TCGTGGAAGG 
    TGGGAGATGT TTGGAGAATG CTGTTGAGTT CAAGAGAGGG ATCTGTGGAA 
    TCTCCCATGA TGAGTCCGAG AATGCTCTGT TCGTGGTCAT GAGGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 58399 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13965 - 5-prime edge 
    TACTTTCTCC CTGGAGAGCG ACACGTGTCT AGCTCAGGGG ATATTGGCGC 
    GGCTCAATCA ACAGCTCTCT TCTCCCGTCG GGAAGCCATT AGAAAGAGCA 
    GCTTTTTACT TCAAAGAAGC TCTCAATAAT CTCCTTCACA ACGTCTCCCA 
    AACCCTAAAC CCTTATTCCC TCATCTTCAA GATCGCTGCT TACAAATCCT 
    TCTCAGAGAT CTCTCCCGTT CTTCAGTTCG CCAACTTTAC CTCCAACCAA 
    GCCCTCTTAG AGTCCTTCCA TGGCTTCCAC CGTCTCCACA TCATCGACTT 
    CGATATCGGC TACGGTGGCC AATGGGCTTC CCTCATGCAA GAGCTTGTTC 
    TCCGCGACAA CGCCGCTCCT CTCTCCCTCA AGATCACCGT TTTCGCTTCT 
    CCGGCGAACC ACGACCAGCT CGAACTTGGC TTCCCTCAAG ACAACCTCCA 
    GCACTTCGCC TCTGAGATC

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR