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ET13925

CSHL Arabidopsis genetrap mutant lines

Original: ET13925

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13925

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9122702 [Map]; Strand: w
      • AT2G21310.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 2; Position: 9126041 [Map]; Strand: w
      • AT2G21320.1 - [+] show detail - B-box zinc finger family protein
        Distance: -222; Region: promoter
    Flanking Genome Sequence: ET13925 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CGCATTTGCT 
    ATGGGTTAAA AGCTATTTTC AAAAATAAAT TGTGAAGAAA TACTTCACAC 
    TCACGTATGT ATATTAAATG ATGGAATACG TGAGTGTAAA GTAGAGTAGT 
    TCTAATAGTA TTTATCAGTG ACTGATTACA TCAATTTTAA TTCTAATAGT 
    ATTTGCTAGA CCTCGCCTGG ACCGGTCAAT GTTTCTACTT ACTGCGCTCA 
    TCAAACGGTT ACCATTTGAA TCTAGACATG TTGTTGATGT AAAAAACTTG 
    AATCTTTAAC TGTTTTATGC GGAAGCTCTC ACTAAATCTC TCTTTGTTCG 
    ATCACTCGTG TGTTTAGACA AAGAAAGTAA AACAGACACA AGCAAATGTT 
    AACCCAGTTC ACGTTCAGTG ATGAACGCTA CGTCTGGACC GAGATTACCC 
    GGAAATCCAC TAGAAAGCCT TGGTTACACA AACCCTTAAA AACAAGACTG 
    AATAAACTTT CAGCTGCCTC TCTTGCACTT ACTCTCTTAA CCCTAATGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268727 [Map]; Strand: c
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -696; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -677; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -299; Region: promoter
    Flanking Genome Sequence: ET13925 - 5-prime edge 
    TCCTACTTTA TCCCTGCTTC GGTAATTCTC TTCGTCGCTG TTCAGATTGA 
    TGTAAACTTG TAGATTAATG TCCATACTTG TAGACTTTGT ATTTGATTAA 
    TGAAAACATA GTTAGGTTGC ATGATTACGA CATGTAATAT ATTGTTTTAA 
    ATAGTCACTA AAGCAGTGGT TTATAACATG TCTAATCACA AATAACGGTT 
    CTTGCTCGGT AATATGAACC CAAAAGTTAC TGTCTTACTC TACCTGCACT 
    AATGGGGGTG ATGGTGTGCT CTTTTTAGTC TTCAAACACG ATAATCCCAT 
    GATAAAATCC TTGTGTACTT GGTTTAAGTT GTGACTTGTG AGTACTTTTA 
    GTTTTAGGTG GGAAAGAAAT GAAAACATTG TGGGCTGACG GTACTAGGTA 
    AGCCCAATAA GGAAAACGAC TCTACGCAAT CAGAGAAGGT CGCCAAGCGT 
    ACGGTCGTTC CCTC

AT2G21310.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G21320.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G38960.1); Has 1943 Blast hits to 1369 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.2

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR