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ET13862

CSHL Arabidopsis genetrap mutant lines

Original: ET13862

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13862

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239283 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 2752; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 872; Region: intergenic
    Flanking Genome Sequence: ET13862 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGGGGAG TGGGGTCCGT 
    ATATCCATAC TCCCACTTCA ATTTTAAACT CTCGTTTCGG TTTAAATTTG
    AACTTCGATT TTTCTACTTC AAATTTTCTT GGAATTTGAT TTCTAAATCT
    TTTTACTTTG AAATATTTTA ACGGGCGACG GCCTATTATT TCCAAAATTT
    CATTTACACC GTTTAGGTTA CAGCGCGCTA TATTTTTTTT TTTTTG
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239360 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 2829; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 795; Region: intergenic
    Flanking Genome Sequence: ET13862 - 5-prime edge
    CCTACTTTCT CCCCCCCTTT TTGCTCGTTC GACGAGTGTT TTTGCAAGTT 
    TACGCATAAC ATATAGCAGA GAATGCATAT ATATGATTAA GCTGTACTTG
    TTAGATTATA ATAGATAACA CTTATCTTAT TGGTTTGGAC ATAGAGATGA
    TGATATCTAC GGCATGGACG ATCTGAATCT CTGAGATTGT AAACGTCGTT
    GTATGAAAAT CTACATTTAA GATGTTGTTC GTTAGAGGAG ATCTCATCTT
    TGCGTAGAAA GAGAGAAGCA AGGATGAATG CTTGTGATAT AAGTGAGAAT
    GTCAATCAAG CTTAATTAAT ATGTAAGAAA GTAATTGAAC TTATCTTTTA
    TGAGGGAGGT CGTCGAGACA GAATTGGAGA TCGCATCATT GATGAATGAG
    TGGAAATCTT GAGCGATTGC TAGTGATGAT CCATTGTCAC TTGTTGGTGT
    AATGTACTTC CTTTTGCTGA TTTATAGAAG AACTGATAAC TTCCGTTTGA
    ACCGTTAAAC TATTGATCCC ACCGTTGAAT CTTTAGCTGA TAGTCCCACG
    AAGATCTTGT CCGAATTTTA GTCAGATCGG ATATTGCCTG AGGCTTCTAC
    CGTCTTATGA AGTTGCTGTG A

AT3G60170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G60176.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR