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ET13830

CSHL Arabidopsis genetrap mutant lines

Original: ET13830

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13830

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22058497 [Map]; Strand: w
      • AT3G59710.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -1341; Region: intergenic
      • AT3G59720.1 - [+] show detail - transposable element gene
        Distance: -1508; Region: intergenic
    Flanking Genome Sequence: ET13830 - 3-prime edge 
    TACCGACCGT TACTTTCCCT TTTCATCCCT AGAAATGACT TGGTAAGATT 
    CCGTATTGAT AAAGACCGAT AAACCATCTC CAACACCTAT ATCACGTACA 
    ATTCTCCAAT AGGCCATGCA TCAACTGTGG CGGCAAAGCT GACTACATAT 
    TATATTATGC TTGATAAATT TAAACTTTAT GAATTAATAA GCCCAATGAT 
    GAAGCAAGCA CATGCCTAAA TCTCACTAAC TCTCATATAT GTCATAAAGA 
    ACTTTGAAGT TTTTAAACTA AGTAATTGTT TATACAAAAC CAAGTAGACA 
    TAATGTTATG TCTAAACTGA ATGGGTTTTC TTAATTGAAG CATGGAAAGC 
    ATTAAACAAT TAACTAAAGG CTCTTAGACA ATACTAATCT ACTCCTTTTT 
    TCCTTCTAGA CCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22058596 [Map]; Strand: w
      • AT3G59710.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -1440; Region: intergenic
      • AT3G59720.1 - [+] show detail - transposable element gene
        Distance: -1409; Region: intergenic
    Flanking Genome Sequence: ET13830 - 5-prime edge 
    CCTACTTTCT CCCTGGTCAT TTCTAAGTGT TGCATCTATG TATAAACCAA 
    TTATTGGAGA CTTAAACAAA AAGTAGTATA TATATACATG GTTTGCACAT 
    TGTGCTATAT ATATGTTTAG ATATATAACA GTCTTTGGTC GGAGGGGGGT 
    TTGGTGAGGA AGACAATGAC TATTATTATT ATAAAGAGAA AAGGGAATCT 
    TTCTGGTTTC AACACAAACT AATCTCCCAA AAAAAATAAA AAAAACTAGC 
    AATATTAGAA GACCTAACGG TTAATTAGTG ACTTTGATAA TCTTGGCCTC 
    TGGTTCTGTC CAAGAGCAGA CAAGTGAATG CAATTGTCTG GTTTTTTTTC 
    TTTTTTTTTT TGGCAAAAAA AAAAAATTTT TTTAGAGAAA GTTTGGGGTT 
    CCCATTTTGA AAAACCCAAA GGTTTGGCCC GTCCCCAAAA ATTTGGAAAA 
    ACCGGGAAAA TTTTTCTTTT TGCCTTCCCG GGAGAAAGAA AAAAAAAGCC 
    CCTTTAGGGG CCCCCCGGGG TCAGGGTTTT TTGGGGCCAA ATTTCCTTTG 
    GGGAAAAAAA AAAAGGGAAA CTTTT

AT3G59710.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G51030.1); Has 60289 Blast hits to 60264 proteins in 3086 species: Archae - 599; Bacteria - 42094; Metazoa - 4067; Fungi - 2569; Plants - 1993; Viruses - 0; Other Eukaryotes - 8967 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59720.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-214 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR