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ET13796

CSHL Arabidopsis genetrap mutant lines

Original: ET13796

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13796

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4788014 [Map]; Strand: w
      • AT5G14800.1 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: -175; Region: promoter
      • AT5G14800.2 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: -175; Region: promoter
      • AT5G14810.1 - [+] show detail - transposable element gene
        Distance: -987; Region: promoter
    Flanking Genome Sequence: ET13796 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATCA GGATTGGGGG 
    GCAACTGTTA GGGGTCGGAT TGGGCCTACT TGGCCCAATG CCCAAACCCA
    AGTCAAAAGC CCAAAATAAG TTCCAAACCA AGGAGTATTA AGGCGAAGGG
    TAGTTTCGTC AAATCCCTCG ATGAATGCCC TACACGCGCA GAAGGCTATA
    AATACGGAAT AGCATGTCTT GTCAAAGGGG GAGGCCGCCA GGACACTTAG
    AGACAAAGAG CAACTCATCA GCTCACCCGT CTGAAGTA
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4788078 [Map]; Strand: w
      • AT5G14800.1 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: -239; Region: promoter
      • AT5G14800.2 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: -239; Region: promoter
      • AT5G14810.1 - [+] show detail - transposable element gene
        Distance: -923; Region: promoter
    Flanking Genome Sequence: ET13796 - 5-prime edge
    TCCTACTTTC TCCCTGATCC TGATGCATCG TTGATGACGT GGATCAGGAT 
    TTCAGGTGCA CGAAACTCAA TCGAAGGAAG TGAAAAGTCG CGCATGGGGA
    AGACGCAATG TTTGGTTTGT CTTTCATGAT TCTCAAGGTT CGAGGATCGA
    AACGTCGCGT GGCTATCAAA GTATAGGCTG CTATTACGGC AATGTGCTGT
    CTCGGTGATA GTCAAGCGAG ACGACAAGGA AGGTTAAAAG GGTCGCCTCG
    GCTGTTGCGT GACCGTCGCA TTTCTGAAGA GCCTCCTGGA TCAAAGTGGT
    CGTCTGGTGT TCGAGTTGGG ATGTTCGAGT CATTCGAAAG TGGTTCTTTG
    AGGGGGAGAG GGAAGAGACG AGGGTCGTTA ATCGTGATGA ACAACGAGCT
    AGCGTTCCGA ACTCGTCCGA TGCGTTTTGC GTGCCAATGA TCATTATTGG
    AGTTATCGTT TCGTTTGAAG GAGGCGTTCC TTTTGCTTTG AACTCTGGTG
    TTTGTGCTGA GCTCGCTGTT TGAGAGGCAA GATTGCTCAA GCGGTGCCCG
    ATCTAGACGA AATCTTGAGC CGAGGTTGAG AAGATGAGTG GAAAGTATGA
    TAACTTAGTT GAACGTGCTT TTTCAGGGAG AAAAGAGCTT CGGGAGCGTC
    GGTTGGAGTA TGTCGACCGT TGATAAGATG GCGGAGCTCA TCGAGAAGCG
    ATTGAATCGG ATCAAGACCT ATATTGACGA TACGAAGGTG GCGGAGCCAA
    AGTTTTTGAA TTCTATCAAG TGTATGGAAA CATCAAGACT CTCGAGGCG

AT5G14800.1

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7885 Blast hits to 7882 proteins in 2434 species: Archae - 115; Bacteria - 5234; Metazoa - 373; Fungi - 241; Plants - 70; Viruses - 0; Other Eukaryotes - 1852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14800.2

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7429 Blast hits to 7426 proteins in 2378 species: Archae - 102; Bacteria - 5104; Metazoa - 368; Fungi - 229; Plants - 70; Viruses - 0; Other Eukaryotes - 1556 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retrotransposon family
Link
InterPro Scan - TAIR