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ET13773

CSHL Arabidopsis genetrap mutant lines

Original: ET13773

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13773

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 528091 [Map]; Strand: c
      • AT2G02100.1 - [+] show detail - low-molecular-weight cysteine-rich 69
        Distance: -259; Region: promoter
    Flanking Genome Sequence: ET13773 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCGAA 
    ACGGTAGATG GACTCCACAA CATCTGCGTG TCTTGTCACC TTACGTTACG 
    GACCACAATT TACACCTATG AAAGTGTCGG TAAAGCAAAT AAAATCGAGA 
    AACTCACACC ACTCTTATTC AAATCCAAAG TGAATACTCC AAAAATAAAG 
    TAAATGATAT TTATCCAAAA ATATCTAACA AACGCGTAAA ATGTGAATTA 
    TCTTGAACGT TTTAATACCT CTTTACTCTC TTTATATAGT GCCATTTTCC 
    TCACTAGCAG CAACACACTT GAACACTACT TTCGAACTCT CTCTTCATCT 
    NCAACTCGAC TAAANNGATC CATCATTCTT TTAAAAGATG TGTAAATCAG 
    TGCACACCAT CATTTTAGAC TATAATGTAC TCCATATCCT TAGAAATTAC 
    TACTATTTGC AAAATATAAT TTTATTAATT CATGTTTGTT TCATTAACAA 
    TTTGTACTAT TATTGTGAAA CACCTAAACC TATAGTAATT AGTCCTACAA 
    AACAAAAAAA AGAACAAAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1260556 [Map]; Strand: c
      • AT4G02820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: ET13773 - 5-prime edge 
    CTTTCTCCCT GAGCTTACCA AGTCATAACT ACCCAACAAG AAGAGTCGAA 
    GTAGGTTTTT CAGTTAGGCA ACCTCTCAAA GATCATTTGA CATCATCAGA 
    AGAACTATAG AGAACCAAAA ATATAAAAAG AGATTTTAAT CATATTAAAT 
    TCTGAAAAGA AAAAAAACAG GAAAATCATA TCTTTGGAGC AACTTCATTC 
    CTTAGCAGCT TTGAACACTC TCCTCAAGCT CTATATGTCC GAGCAAGTGG 
    AATGTTACTG CTTCAAACAA GTATCTCGAT TGGGACCGAC TTGAGAGAGC 
    GGTTTCTGTA TTCTTCGGCT GGTGGAAGTT GCAGACTGAA ACTAACTCTG 
    TAGCTTTCAT ACTAAGAAAT GGTGGAAGAG ATTTCAGTCA CACGCATTTG 
    ACTGGTTAGT CTTATAAGCT CCTTAGTCTC TTCTCTCCAA CTCGACAAAG 
    NNGCTTGAGG TTGTTTATTG CATGAATGTT GCACATATAT ATATATTTTT 
    ACCGACAACC ATTTGATTTA TTTTGTTATT GTTTTACAGG CACACTTTAT 
    GCAAATCGAC AGAACTTTGA ACAAATTAAC CGAG

AT2G02100.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 69
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 15018 Blast hits to 7498 proteins in 232 species: Archae - 0; Bacteria - 55; Metazoa - 87; Fungi - 92; Plants - 14442; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR