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ET13572

CSHL Arabidopsis genetrap mutant lines

Original: ET13572

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13572

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11036064 [Map]; Strand: w
      • AT4G20480.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -190; Region: promoter
      • AT4G20490.1 - [+] show detail - transposable element gene
        Distance: -619; Region: promoter
    Flanking Genome Sequence: ET13572 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGACAGGG 
    TATCCTAATT CTCCAATTGG TTCTAGCAAA GTGGAAAAAT CACTCAGTCT 
    ATTCATCTCA CTCGACCAGA GAAGCCCATT AAAGTGAATC CCATTAAAGC 
    GAAGCCCATT GTGAGTATAT ATACTGCGGC GTCGGTATAA TATCCTCATT 
    CAAAAATAAG AAAACCTAGT CGACGATATC GAGATCGATC CAACCTGCTA 
    ACATCTCTAA GGTAAAATTC TCGGTCCTTA TCTCATCATG TTTCTTTCAA 
    AACTGATCGG CTGATTGCAT AGATAGAACA CGATCTCATC ATGTTTCTTT 
    CAAAACTGAT CGGCTGATTG CATAGATAGA ACACGATTAG CAGCTGTGTT 
    CCTCTATATC TCCCTCTCTC GATCGGTGTG TCAATTTATC TTTCTGATGT 
    TTGATTTTCT AAGCAAAATT CATCGACTGA TTGCATAGAT AGAAGAACCC 
    TACAACTTCT ATAGCAGCCG TGTTCCTCTC GGTTCTCTGA TGTTTGACTG 
    AATTGAATTT GATTCTTTTT TTTTTAAGGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11127645 [Map]; Strand: w
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13572 - 5-prime edge 
    CTTTCTAGTT TCTTAAATTG TTGTGTGCCG ATGAAGAATA GAGAATGATA 
    GCTTTAGATG TCTTTGATAT ACTAAAGACT AAAGGTCATG GCAGTGTCTC 
    TGTGTACAAC ATTCTTATGG AAGCTCTTTA CAAGATGGGT GATTTTTTCA 
    AAAGTCCTTG TCACTTTTCT ATGAAATGAA GGAATTTGGG TTTGAACCAG 
    ATTCATCATC TTAAAGTATT GCACTTTGCT GTTTGTTGAC AAAGGGGATG 
    TCAAAGAGGC TT

AT4G20480.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20490.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)
Link
InterPro Scan - TAIR

AT4G20740.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Link
InterPro Scan - TAIR