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ET13422

CSHL Arabidopsis genetrap mutant lines

Original: ET13422

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13422

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19807074 [Map]; Strand: w
      • AT3G53420.2 - [+] show detail - plasma membrane intrinsic protein 2A
        Distance: -1411; Region: intergenic
      • AT3G53430.1 - [+] show detail - Ribosomal protein L11 family protein
        Distance: 2613; Region: intergenic
    Flanking Genome Sequence: ET13422 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC AGTGGAATCT CGACCCACCC 
    CACAAAACGG CACCATAACT TTACACCCTG GTTTTAGAGA GTGATATACC
    AACACAACAA TTATGAAAAA GGGTTCGTCT AGGCTTTGGT TACCTTTTTT
    TTTTTTTTTT GGGGACGGGG GGGGGATTTT TCCCCCTTTT TGGGGGGGGG
    AACCAAAAAC CCGGAAAAAT AGGGGGAAAA AAAAAATAAA AAAAATCCCC
    CCCCAGGGGG CCCCCCTCAT TAAAAAAAAC CCCCAAAAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18490240 [Map]; Strand: w
      • AT4G39850.2 - [+] show detail - peroxisomal ABC transporter 1
        Distance: 0; Region: intron4 (CDS)
      • AT4G39850.3 - [+] show detail - peroxisomal ABC transporter 1
        Distance: 0; Region: intron4 (CDS)
      • AT4G39850.1 - [+] show detail - peroxisomal ABC transporter 1
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: ET13422 - 5-prime edge
    CTTTCTCCCT GTTTTGAGGA GCAACTGCCA TCTCTTCTGC CATTCAATTG 
    TTTACTATTT CTTTAGATAC GAGTGTTTTT GACTAGTGAG AGTATCGAGT
    ATACTTCAGA CTGCTGGATA TCTCTTCACT CAGTTTTAAT TGTTGTTTTC
    AGAATATGGT ATATTACAAA ATATCACACG TGGATGGTCG GATTACGCAC
    CCTGAACAAA GAATTGCCAG CGATGTACCA AGATTCTCCT CAGAGTTGAG
    CGATCTTATA CTGGATGATT TGACGGCGGT TACTGATGGA ATTTTGTATG
    CATGGCGCCT GTGTTCATAT GCTAGTCCAA AATACATCTT CTGGATACTG
    GTGATTCATG TTTAATCTTC TATACTTCAA GATTGACCTT ATGTTGGGCC
    ATTTATGCTG CTTTTCCTTG TATCCGTTCA CAGTACAATT CTTTCGGTCT
    GGTATCTATA AACTAACCTA TACAATTGTT GTGTAGGCCT ATGTACTGGG
    GGCTGGGACG GCGATAAGAA ACTTTTCTCC TTCTTTTGGG AAATTGATGT
    CCAAGGAACA GCAGTTAGAA GGAGAGTACC GGCAACTTCA TTCACGCTTA
    AGGACTCATT CGGAAAGCAT AGCATTCTAT GGTGGGGAAA CCAGGGAAGA
    ATCTCATATA CAACAAAAGT TCAA

AT3G53420.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2A
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev. When expressed in yeast cells can conduct hydrogen peroxide into those cells.
Computational Description
plasma membrane intrinsic protein 2A (PIP2A); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, hydrogen peroxide transmembrane transport, water transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G53430.1

Model type
Protein coding
Short Description
Ribosomal protein L11 family protein
Computational Description
Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT2G37190.1); Has 1591 Blast hits to 1591 proteins in 594 species: Archae - 303; Bacteria - 412; Metazoa - 359; Fungi - 167; Plants - 131; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39850.1

Model type
Protein coding
Short Description
peroxisomal ABC transporter 1
Curator Summary
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39850.2

Model type
Protein coding
Short Description
peroxisomal ABC transporter 1
Curator Summary
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
Link
InterPro Scan - TAIR

AT4G39850.3

Model type
Protein coding
Short Description
peroxisomal ABC transporter 1
Curator Summary
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
Link
InterPro Scan - TAIR