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ET13383

CSHL Arabidopsis genetrap mutant lines

Original: ET13383

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13383

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15563108 [Map]; Strand: c
      • AT5G38870.1 - [+] show detail - transposable element gene
        Distance: 986; Region: intergenic
      • AT5G38880.1 - [+] show detail - unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - ...
        Distance: 198; Region: intergenic
    Flanking Genome Sequence: ET13383 - 3-prime edge
    AATGAAACGG TAGAGGTTTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    GATAAAGGGT TGTCCAAGTA AAGACCAACA CAATCCAATC TTCACGAGAG
    TTTAATGTTT GAGAGTATTC CTCAAAACCC TCACGGTCGT TACTCGTACC
    CAGTCCCAAC AAACAAGTAG TTGGTACTAA CACAAAATCT CTCTCAACAT
    TCACATTCAA AGATTGACCA TAAATTAGAA AAAAATAAAA AGCTTACAAA
    GATTGCAGAA AATGAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1542925 [Map]; Strand: c
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: -395; Region: promoter
    Flanking Genome Sequence: ET13383 - 5-prime edge
    CTTTATCCCT GGATTTCGCT AAGACTGTTT AAGAACCAAA CCGAAATTTT 
    TCCGGTCTAG TCTGGTTTAG TTTTCCACTG GTTTGGTTTT CTGTCAAAAA
    TGTATTTTTT CTGTACTCTA AAATATACCA ATCAATTCGT TACTGTAGGG
    TTTAAAAAAA TATATATATA TCAGACCAAA GAAAAATTTA AAAACAAAAT
    AATTAAGAGT CTTATACAAC AAGTTAGGTT ACAGGAGAAA AGGAGAAAGA
    GGGTTAGGTT AAATAGAGAA ACACTTTCTC AAAAGAGTTG TGAAGAGTGA
    GGTAGAACTA TGATCAGGCT TTCCTTTGAG AAAGTACGCG TGGTCGGTGC
    TGCAGTAAAG ATAGCTCTCC TTACCAGTTG AATTCTTGGT AAGGACATTG
    GAGAAACCT

AT2G04450.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 6
Curator Summary
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
Computational Description
nudix hydrolase homolog 6 (NUDT6); FUNCTIONS IN: hydrolase activity, ADP-ribose diphosphatase activity, NAD or NADH binding, NADH pyrophosphatase activity; INVOLVED IN: response to other organism, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: MutT/nudix family protein (TAIR:AT4G12720.3); Has 2998 Blast hits to 2996 proteins in 719 species: Archae - 33; Bacteria - 1649; Metazoa - 236; Fungi - 25; Plants - 166; Viruses - 14; Other Eukaryotes - 875 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38870.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G38880.1

Model type
Protein coding
Computational Description
unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Link
InterPro Scan - TAIR