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ET13293

CSHL Arabidopsis genetrap mutant lines

Original: ET13293

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13293

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22744150 [Map]; Strand: w
      • AT3G61460.1 - [+] show detail - brassinosteroid-responsive RING-H2
        Distance: -1866; Region: intergenic
      • AT3G61470.1 - [+] show detail - photosystem I light harvesting complex gene 2
        Distance: -1503; Region: intergenic
    Flanking Genome Sequence: ET13293 - 5-prime edge 
    GCTAGTAGAA CGGTCACAAA AACCCACAAA AGTATCAAAA ACTCGTAAAG 
    CATCAACGTT TGAGCTCATT TTGTTGTTAT AGTCAAAATC ATTCAAAGTT 
    ATTTTGACAA GACGTATTGG TACCATAATA ACGCATTAAT ACACCTATAC 
    ATTTATAAAT TATTTTATTA GTTATACACG ATGGTAGTAC AAGAATACAT 
    GTATTGTAGT AGAATTTTGT AATCAATTAA TGTCACAAAA TTCAAACCAA 
    ACTTCAATGA GAAAATTCAT GATGCTCAAC TAGTCAATGT GTATGTTATA 
    CGACAAAAAA AACATGCAAT TTGTCAATTA CCATCGATCC AAAAAAAAAC 
    CCTCTAAAAC GATAAGAGGA ACGAAATAAG TATGGAAAAG GGGGGGTTGA 
    TTTGAAAATG TTATAATGAG GCCAAGACAG CCACAGGGCC CTATGGCTGG 
    AAGGCATATC ATCTCATCTC CTACCTCTCC CACATTTCTC TTTGGCAGGC 
    CACGGTTAAA TTTT

AT3G61460.1

Model type
Protein coding
Short Description
brassinosteroid-responsive RING-H2
Curator Summary
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
Computational Description
brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61470.1

Model type
Protein coding
Short Description
photosystem I light harvesting complex gene 2
Curator Summary
Encodes a component of the light harvesting antenna complex of photosystem I.
Computational Description
photosystem I light harvesting complex gene 2 (LHCA2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR