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ET13206

CSHL Arabidopsis genetrap mutant lines

Original: ET13206

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13206

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9583293 [Map]; Strand: w
      • AT2G22540.1 - [+] show detail - K-box region and MADS-box transcription factor family protein
        Distance: 0; Region: intron8 (CDS)
      • AT2G22540.2 - [+] show detail - K-box region and MADS-box transcription factor family protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: ET13206 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TATATATGGT CGTTTAAAGT 
    ATATATTTTT ATATTCCTTG TCTCAATTTA AAAATAAAAA AAAAATCATG 
    TAAAGCTATC AACTCAAAAG AATGTAAAAA GAAAGGGGGA TTAATTGGTT 
    ACCCGAGCCT AAGGGAAGTG CCGGAGCTCT CGGAGTCAAC AGGCGCTCCG 
    GTAGAGTTTC CGGCGTTAGT AATAAACTCC GACGACTGTC CTTCCTCGTA 
    CACAGCAGCG TTCTCCGATT CAGCACCACC GGGGGCATGC ACATTGTTAC 
    ATATCTACAC GTAACCAAAA AAAAATTTCC CAAATTTAAC ATTAAACGGA 
    TAACAAACAT CCAAAATTCA AAATATCCAA GACTTTTTTT TTTCCCCCGT 
    CCTTGCTTGC CAAGTCGCCC GTTCTCTCCC GTTAGTTGCG TCCCCTGAAA 
    AAACCAAAAC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5775816 [Map]; Strand: c
      • AT3G16910.1 - [+] show detail - acyl-activating enzyme 7
        Distance: -315; Region: promoter
    Flanking Genome Sequence: ET13206 - 5-prime edge 
    GTTATTCTTC AATGGCTAAC AATATTATCA AGAATAACGT GATTCTGTTG 
    CCATTGTTTT CCTATAATGG CCAACAAAAT TTATTTCAAA ACAAAATGAA 
    CTACTCTTTA TTCTTCTTTG GGTATGTTGA AATAATCGAA TAGAAAATGA 
    CAAAATGTAA TCTTTCCCAT TTAGTCGAAC AATATTGTAG ATTTGTAGTA 
    ACAGTCAGAG CATGATCCTC AAATTGCATC GACGACCTCA CAAAAATGTT 
    CGGTTCAAAT TAATTTGAGA TAATTTCCGG TCCGCTAACC GGAAAAACCA 
    GAAGACGCCA CGTGTCGATT ACACCTCACC CAAAACGGCG ATACACACAC 
    ACTCCATATA AGCTTTCCTC CAACCTTTAC GACTTCAACA ACGTGTTTGT 
    GACTTTGTGA TTGGATTCTC CACTCACTGC TCCAGATTTG AATAAACACA 
    ACCTAAACAA ATCGAGAGAG TCAGATATGG CGGCAACGAA GTGGCGTGAC 
    ATCGATGATC TTCCCAAGAT TCCGGCCAAC TACACGGCGT TGACTCCGCT 
    TTGGTTCCTT GATAGGGCTG CCGTGGTTC

AT2G22540.1

Model type
Protein coding
Short Description
K-box region and MADS-box transcription factor family protein
Curator Summary
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Computational Description
SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7469 Blast hits to 7448 proteins in 905 species: Archae - 3; Bacteria - 14; Metazoa - 824; Fungi - 324; Plants - 6168; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22540.2

Model type
Protein coding
Short Description
K-box region and MADS-box transcription factor family protein
Curator Summary
Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Computational Description
SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7281 Blast hits to 7260 proteins in 901 species: Archae - 3; Bacteria - 13; Metazoa - 824; Fungi - 296; Plants - 6010; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16910.1

Model type
Protein coding
Short Description
acyl-activating enzyme 7
Curator Summary
Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.
Computational Description
acyl-activating enzyme 7 (AAE7); FUNCTIONS IN: acetate-CoA ligase activity, AMP binding; INVOLVED IN: glyoxylate cycle, acetate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 1 (TAIR:AT1G20560.1); Has 73044 Blast hits to 67204 proteins in 3521 species: Archae - 1140; Bacteria - 48125; Metazoa - 3129; Fungi - 3108; Plants - 2327; Viruses - 1; Other Eukaryotes - 15214 (source: NCBI BLink).
Link
InterPro Scan - TAIR