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ET13198

CSHL Arabidopsis genetrap mutant lines

Original: ET13198

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13198

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18020202 [Map]; Strand: c
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: -472; Region: promoter
    Flanking Genome Sequence: ET13198 - 3-prime edge
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATTCA 
    CATATGACTC ATGGGAAAGA CCGACAAAGG GATCGTATTA TCCAAATATG
    GTTACGATAA CATCCACTGA ATATCACTCA AAATGAATTA TTGTCTCTTA
    CTACATATAT TACGGCTAGT TGATGATTTG TTTGAAAAAT TCAATCTTAC
    AAAATAATTA ATAGATTTGA TGCTGCTCAA AGTGGTCTCT TTTATTTGCA
    CCGCAAAAAG CCAGTATATA TCCCCATTAG AAAAGACGTG ACAAAGTGTT
    TAATAGATCC TTTATGTTTT CCTCGGACCC ATGCATATAT AAGTGTATTT
    AAATCTTTTA TAAGGTTTTT ATAGCCATAA ATAAACATAT TTAGTTCAAA
    ATATGAATAA TTAAGTAATT GGAATAGCGA GACACGTTCC TTGAGATGAT
    AACACGAGCA TATATTCTTC ATCACTTTTG TTTGCTTCAC ATCATATACG
    CTAACTTATG TGTGTGTGTA ATATATGCTC TCAGAGCTAA CAAGTAAGAA
    GAAGAAGAAT GTCTGAGAGT TTCAAAGTGT GCTTCTGTTG CAGCAGAAGC
    TTTAAGGAGA AAACGAGGCA GCCACCAGTG AGCATCAAGA GACTCTTCGA
    AGCTTACTCA AGAAACGGCA AGATGTCTTT CGATGAGCTT CTAAGATTTG
    TGAGTGAAGT CCAAGGAGAA CGGCACGCAG GGTTGGACTA CGTGCAAGAT
    ATCTTCACAG CGTAAACACA CACG

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR