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ET13166

CSHL Arabidopsis genetrap mutant lines

Original: ET13166

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13166

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23372791 [Map]; Strand: w
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: -109; Region: promoter
      • AT3G63250.2 - [+] show detail - homocysteine methyltransferase 2
        Distance: -175; Region: promoter
    Flanking Genome Sequence: ET13166 - 3-prime edge
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TACTTACAAG 
    AGGGGTCTGA AGGAAACATA GAAAAGGATT GGGCCGATAC TGTTATTAGT
    ATTCAAGATA AAGGTCTAAA CCTACAATTT GTAAACAAAA TTAGTACTAA
    AGATTTTGAG TGTTTCTCTC TACAGTTTTT TGTGTTTATC GTATGTTTCA
    CACAGTACAC GCTTCAGTGG GAGTTGTTGG GTGATCGGTC CGAGGCGACA
    TACAAGATGA CCGGAAACTC TTTTAACTCG ATGAAAGATT TCCTGAAGCA
    GACAGGCGGC TATGCGGTAA TAGACGGAGG GCTTGCAACG GAGTTCGAGA
    GACATGGAGC AGATCTCAAC GATCCTCTCT GGAGCGCCAA ATGCCTTGTC
    ACCTCTCCTC ACCTCATTCA CACCGTAAGC AGTAAATCCT TTTCTTCTGT
    TGTCAGTGAA ATCTGAATCC AACGTCCAGC TGCGGGACAA GGCCTTGTGC
    TTTTCTTATT TTGGGTGTGA ATAAACCCTA GGATTTTTAG GTTTACTTTG
    ATTGATTGAG TAAATGCCAT GGGTACTCTA A
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23372850 [Map]; Strand: w
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: -168; Region: promoter
      • AT3G63250.2 - [+] show detail - homocysteine methyltransferase 2
        Distance: -234; Region: promoter
    Flanking Genome Sequence: ET13166 - 5-prime edge
    TCCTACTTTC TCCCTGCTTG GAGTAAGTTT TAACTCTCTG TTTTTTTCTT 
    ATCAGATTTT GATGATCAAT TTACATGTGT GCGTCGTGTA TATATGAAAT
    TCGAATCAAC ATCAAAAAAT AAAATAAAGC TTAATCGAAT TATACACGAC
    TGTGTTAAGT ATATAAATAC ATAGAGCGCA GAAAGATTCT TATGACAAAA
    CCCACACCAA TCCAACTCCC ATAGCTCAAA GTAAATACAA AATCCAAAGA
    ATCACGCAGC TCTCAAGAAT ATATCAGACA CGGAGCAAAA AGGAAAGAGA
    GGGAGAGAGA TTCAGGGGCC TCGAGGTTTG AAGAAACAGA GGCACCCCTG
    AAACTGGTCC GGAGCTATCA TTCCACCACC TTTGCTTGTG TCTATGGCTT
    CAAGCAGCTT CACCACCTCC TCCTCTTCCG GAGGCCAGTN TGGATTCGGG
    TCCCAGCATC TCTTCATGAT GTTTGCCACT GCATGCGGGC AGCATTTCGG
    AATCTCTGGT CTCAGATTCT GAGCAAGATG CACCAAACAG TGACTTCATT
    AGATTTCCTG ATTAGCTTTA AC

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63250.2

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); FUNCTIONS IN: homocysteine S-methyltransferase activity; INVOLVED IN: methionine biosynthetic process, S-methylmethionine cycle; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR