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ET13013

CSHL Arabidopsis genetrap mutant lines

Original: ET13013

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13013

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22767755 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -2025; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1162; Region: intergenic
    Flanking Genome Sequence: ET13013 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    TCTAAGGGTA CGTAGGCAAC CTTTTACAAG GGTCAGCTAT AAAACGAATA
    AACTCTATTC TTCCTCGGAC ATCAAGTTCG TCTTCCGGCC TCAAGCTCGC
    CTTTCATCTC ACTCGACCAC GGGCTTACTC CATCTATGCC CGCTGAAGAA
    ATCATCCTTT GTAATCCGTC CAATTCGCCT AAGTCGCAGG CTCGTCTTTA
    ATAGAAAGAT TCTTCTTCCT TCCCTAGAGG TCCCATTTTC GTACTTGTGT
    GATTCGTGCA TCAACAACAG TGACTGGGAT ATTAATTACA CCAACTTCCT
    TTTATCTTGG TTTAGTCTTT AAAAATATTG ATCCTTATTC CTTCGGAAAT
    GCATGTGATG CTTTTGGCAT TAAATCGTGA CTAACAATAT GACCAATGAT
    CGGAACCAAT GATCGGAACC AAAGCTAGAG GGTCAGCTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22767671 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1941; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1246; Region: intergenic
    Flanking Genome Sequence: ET13013 - 5-prime edge
    GCCACACGTA GTTCATATTA GAATAAGTGA GCTAGGCCGT CCTTGGAGGT 
    ATGTCGGCAG GTAGTTGACG AGCCGGCAAA TGTGCGACGA GCTGGATGAA
    CCGTGGAAGA GAGACGAGTT GGACAAACCG AGTTGTTTGC TGAAGGTGTA
    GACGAGCTGG GCGACGAGAT AGGTGGACTA TGCAGTCAAT GGACGAACTG
    CCGCTAGGCG AGGAGGTAGA TGAGTTTTGC AGTCGAGGGA TGAGCTGATA
    GCTAGACGAG TTGGACGATC TGACTAGCTG ACAGCTAGGC GAGGAGATGG
    TCGCTGAGTG ATGGGAAGAG CTTGAAGACG AGCTGAGGAG CTTGATGACG
    AGCTGAGGAG CTTGAGGACG AGCCGAGGAG CTTGAAGAGC TTAAAGGCGA
    GCTGAAGAGT TTGGCGATGA GGAGCGAGCT AACGAGCTTC TTGAGAAGGG
    CGAGCTGACA AGCTACTTTA GACGGACGAG CTACTTGAGA AGGGCGAGAC
    AAGCGACTTG AGACGGACGA GCTACTTGAG AAGGGTGAGC TGACGAGCTA
    CTTGAGACGG GCTATTCTTT GTCTCTAAGT GTCCTGGCGG AATCCCCCCT
    CGTGACAAGA CATGCTATTC GGTATTTATA GCACTATGCG TGTAGGACAT
    TCATCGAGGG ATTTGACGAA ACTACCCTTC GCCTTAATAC TCCTTGGTTT
    GGAACTTATT TTTGGGTTTT TGACT

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR