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ET12966

CSHL Arabidopsis genetrap mutant lines

Original: ET12966

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12966

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18351 [Map]; Strand: c
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12966 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTCGT 
    ACCATGGCCG GTGGAAAACG AGCAAGAGTG GCACCGGAGT GGAGCGGCGG 
    CGGGAGTCAG CGGCTGACCA TGGACACTTA CGACGTAGGT TTCACCTCAA 
    CATCAATGGG CTCGCACGAT AACACAATCG ACGATCATGA CTCCGTCTGC 
    CACAGCCGCC CACAGGCAAG TCATCATATA TATTAACTTG TTCTAGTTAA 
    TGATGTCTCT AGCTTTATAA GTAAATGATA ATAATTAAGG AAAAACGATA 
    GATGGAGGAC GAAGAAGAGA AGAAAGCCGG AGGAAAATCA TCAGTTTCAA 
    CCAAGAGAAG CAGAGCTGCT GCTATTCATA ACCAATCCGA ACGTGTAATG 
    ATTCACTCAA CCATTATTTT ATTTTTCAAA AAAAGTTTCA TCTTCACTCG 
    A

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR