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ET12937

CSHL Arabidopsis genetrap mutant lines

Original: ET12937

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12937

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2853094 [Map]; Strand: w
      • AT1G08900.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G08900.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G08900.3 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET12937 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATCTG AGATATCAAC 
    AGACGAATAA ATCAAAACGC ATAAAGAATG ACGTCATCAT AGAAGATCCA 
    AAAAAATTCA AAAGATAAAC CGGAACCGGT CCAACAGTAA TAACTAATTA 
    CCTGTCGACG ACCAACGAGA GCAGAGATTT TACCGCTGAA CACGGCGGTA 
    ATCATTCCTC CTAATGTCAT TACCGAAGTG AAAAACGAAT ACTGGCCAAC 
    ATAGAAGTAG ACCATTCAAA CCGGGTTACT GGTCTGGTTT ATTGAACCGG 
    CTTGAGAGTC TCAAAAGAAA AAAATGATTT TGATCCATAT GATGAACATT 
    GAACACAGGT GGGCTAACAT CTGCAACGGA AAG

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12937 - 5-prime edge 
    GTTTGCTGTA TTTTTGGTTG GTTCGCTGTA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2853208 [Map]; Strand: w
      • AT1G08900.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT1G08900.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT1G08900.3 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: ET12937 - 5-prime edge 
    ATTTTTGGTT GGCTCGCTGT AGCGTTTGCA CATGTTTGTT TCTCCAAATC 
    TCCCTGTTTA AAACTTTCTA TATATTTATC TACTCAAATT TTGTGTTAAA 
    AAGTTAACAT GTTATTTACT GTGATTATGT GTAGGATATT ATAATGCTTA 
    ATACTGGACG ACTCTTCTTG GGGTTTGGGG TTGGTCTCAT TAGTTATGTG 
    GTAATTAACT TTCTCTCCCC TTTTCATTTA GACAAAATTT CTAGTCCTTT 
    ATTAGAGTGT TAATGTCGTA TTACTCCATT TTATTTATAA AATAAATAGG 
    TTCCTGTGTA TATAGCAGAA ATTACACCCA AAACATTTCG TGGAGGATTT 
    TCTTATTCCA ATCAGGTAAA TAACAAATAG AGACACAGTA TCAAATAACT 
    TATAGTAATA TCTTTCAATA AATTCATAAG CAAAATATTT TATTGTCATC 
    TTGCGTTTGA ACTTGCAGCT TCTACAATGT CTT

AT1G08900.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437; Bacteria - 7818; Metazoa - 5011; Fungi - 6239; Plants - 2470; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08900.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 23143 Blast hits to 22654 proteins in 1781 species: Archae - 437; Bacteria - 7818; Metazoa - 5011; Fungi - 6239; Plants - 2470; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08900.3

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08890.1); Has 22743 Blast hits to 22256 proteins in 1748 species: Archae - 444; Bacteria - 7522; Metazoa - 5012; Fungi - 6093; Plants - 2466; Viruses - 0; Other Eukaryotes - 1206 (source: NCBI BLink).
Link
InterPro Scan - TAIR