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ET12471

CSHL Arabidopsis genetrap mutant lines

Original: ET12471

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12471

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 76383 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -999; Region: promoter
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -999; Region: promoter
    Flanking Genome Sequence: ET12471 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATACA CTCGCAGTGA 
    ATCCAACTCT TCAGCGTATT GAGGGCATCG TACAAGTCTT CTCCGCAAAA 
    TAAGAAGAAG AAGATAATGT AAAATAAACG AAGTTAAATC TAATGGGGTT 
    ACGGTTTGAA TTCAATTGGA TGAAAAATAT TTTTTCTTTT CTTTTCTTTA 
    AAGGACGCAA AGTTCGATGA AGTGGGAGAG AGAGGAAGAG GAAAGGGACT 
    TGTGCATGGA AGTGATTAAG CAAAGGCTCA TTCATCAGTT GGTTTCACAC 
    TTAATAACAT TTCTGCCACA CCACACTTTC CCTCGATCCT CGGCAATTCC 
    ATGCCCTTTT CTATTTATTA GTATTTGTAT ATACTTTCTC TACATTCCAA 
    TGGATATCAT TTTGTCATCA TTATTTTTAC CCGCAAGTGT GTGGTTTCGC 
    TAAATTCCAT AATACAGGAC CACCATTTTG TGGTAACTTC CCAATTGTTC 
    GTGATAATTA CTAGGTCATA GTGAAATTTA AATTTATTTA TATCTGAAAT 
    TAGTTTAAGT TTTTGTAAAT ATTATGGGTA

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR