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54-5116-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4793451 [Map]; Strand: c
      • AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5116-1 - 5-prime edge 
    CTGGGGTCAG TTGTGTTGAA TCAAGTACTA ATCCGGAAGA AGTAGAGAGA 
    GTCTGCAAAG TGATTGATGA ATTGTTTGCG TTAGATAGAA ATATGGAAGC 
    TGTTCTTGAT GAAATGAAAC TAGATTTATC ACATGATCTC ATCGTTGAGG 
    TTTTAGAACG TTTTCGACAT GCTAGGAAGC CTGCATTTAG GTTCTTCTGT 
    TGGGCTGCAG AGAGACAAGG ATTTGCTCAT GACTCAAGAA CATATAACTC 
    CATGATGAGT ATTTTAGCAA AGACTAGACA GTTCGAGACG ATGGTTTCGG 
    TACTCGAAGA GATGGGTACG AAAGGTCTAT TGACGATGGA GACATTCACT 
    ATCGCGATGA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23108095 [Map]; Strand: c
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5116-1 - 3-prime edge 
    GACCCCAGTT TCTTCATCAT TATCGCATTC AGATTCAACT TCTTCATCAC 
    ATCCATCACT AACATTAGAA CTACCACTAG AGAAACCTCT ACACCCAAGA 
    CTCGCATCAA GCAGTTGTAC AGAGGAGTGT GGCAATGGAA TTTGACNGGT 
    AAGGATGATA AGTAGAAGAA TGAATCATAC GAGAGAAGAG AGCACCGGAA 
    AATCGTACTT CCTCTTCTCC TCTCCCGCCG ATTACGCGGC TTTGACTGGA 
    AATGAATTCA TCCGAATCGA ATGAAGAAGA GCAAATGAGG AAGCTTCTTA 
    ATGAAGTCTG AGTGGAGCTT CTTCTCCTAG AGAGATGGAG CCATGGAGCA 
    GCAGCCATGG AAGCTCGACG GCGGTTAGCA ATGGCGAAGT CGGTGAAAAG 
    CCACTGATTT ACGGCGGAGA GCTCTTCACG TATTTGGGCC TTTGTTTGAT 
    TAGAAGCTTT GAGTGATAAT AATTTTGACC CATTAAAGGC CCATTGATCT 
    GGTTACATAT AACCATTGGG TCCACCAGGA GCATTAAAGC GCAAACNCGT 
    CCNGGNCGTN GNCNACNCTT GCNNTTTTTN NNTTNNAANN NATNTGNNTG 
    CNNNNNANNT NNNNNNNANG GGNNNNGNNN TNTNNTNNNN NNNNTTNNNN 
    GGGG

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link
InterPro Scan - TAIR