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54-4732-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22239389 [Map]; Strand: c
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 2858; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 766; Region: intergenic
    Flanking Genome Sequence: 54-4732-1 - 5-prime edge 
    NTCNAACCCG AGNTAATAAT CGGTTCTTCT GATAACGGTC GGTNCGGGAA 
    TTTTCCCATC CTACTTTNAT CCNTGCCNGT TACTCATATA TATGCNAAGG 
    GGGCANTANG CAGCTNGTCT TCGGACAAGA AAAGACTNGC CCCNACACAG 
    AAAAAAGGGG GGGAGTGGGG TCCATATATC CATACTCCGA CGTTCAATNA 
    TTAAACTCTC GNTTCGGTTT AAATNTGAAC TTCATTTTTC TACTTCGAAT 
    TTTCTTGGAA TTCGATTTCT AAATCTTTTT ACTTTGAAAT ATTTTAACGG 
    GCGACGGCCT ATTATTTTCA AAGTTTCATT TACACCGCTT CGGTTACAGC 
    GCGCTATATA ANTATTCAAG ATAAGAATCT ATTCGGATAT TTTTCCGAGC 
    AGGCTATGAA TTCTATCTTC TGAAACCCGG TTATACTTAA CACCGNTGCC 
    CCANCTCGTT TCTAAACGCT GGTGTAAAGA CTGANTCAAG ATCCGGGTCG 
    GCNACCNTGG GGTGTTCAAN NCTACNTGAA AATNCAAGTT ACCTNTAAAC 
    ACAACTGGGT NGTGNNCTTA ACACCCCTNN TGCNTGAAAA AAAAAGNTTT 
    NTTNCCGAAA CGCNCNAANA NNTTANCTTC CTACAAAAAC NCCAGNCCCT 
    ACCTTNTCAN GANCTNGNNN GNCCNAGAAA CNTANNNCCN AACNTNTTCA 
    TTAANCCCNN NNGGCCGNGC CNTTTTGNTN TCNACCNGNC TANNGGNGTT 
    NNATTGNCNT CNGGGNGCGG NGGCTTNGAA ATTNNANNAA TCCCGANAAG 
    CCGGGGTCCG GGNNNAANNN NTGGGNAAAA AAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26388128 [Map]; Strand: w
      • AT5G65970.1 - [+] show detail - Seven transmembrane MLO family protein
        Distance: 0; Region: intron13 (CDS)
    Flanking Genome Sequence: 54-4732-1 - 3-prime edge 
    AAAAAAANAA AANTTAAAGN NGNCTTGTTT NGGNAANCCG AAGTCTTNNT 
    TCGACCGTTA CANGACCGTT NTCATCNTNG CTCNGCAAGT TTGATANANN 
    TGCAGCNGNT GGAGCTTTGA TTNTGTGCAG CTACATCACA CTTCCTTTGT 
    NTGCNCTAGN NACGTCAGAG TACATTATCC TAATTACAGC CTTTACTCTC 
    CNGCATATGT GTGTCTGCAC GNGCTNTCTT GTNTGTTACT AAACANCAAA 
    CNTTANGTNT GTNTGATGTG GGCAGATGGG TTACAGNNCA TGACGGNAAG 
    NNNGAGAGNN GNNGNAGCGA CTGGGAGGGA GCANGNGNAG AAATGNGCGN 
    NATGANNTGN GNACGCANNA AAAAGGGGCG ANNGCCNAGC GAANCCANNT 
    NAAAGAGGNN CANTGGTGGA TNNAGAAAAT GNNGANAACA TNAANCNTNC 
    ATANNATTTN ACNCNANNTG GGAGNACTNN CTNAATNCNG GCTTAAAGGA 
    TNCNNCTTNG NCNANTCCGA GNGCANNGAT TGACANNNAN NAAAANNNNC 
    GNNGNNNNAN NNAANANTNT NNGGNACCNN GGACNGCNGA GANAANTGGN 
    ACCNNANGCC NANCAANGTA GGANNAAAAG AANTTNAGAN GAAANNGNAN 
    NCCGCCCNNG CGNGGGAGNN ANANNGNAAC GANAAAAAGN TAGAGANGTA 
    GAAAGNNNGN ANAATNGGTA GGGANNNGNA AAGNAGNNNN NGNAGNCNAN 
    ANNTNTNTTA ANANGAANAN AAGNAAGANC NANTNANNNG NGAAANNAAN 
    ANANNGGNAG GCNANAGGAA NANNANNAAA NANAAANANA NNAANGGGNG 
    NGNNNCNAGN AAG

AT3G60170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G60176.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT5G65970.1

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s
Computational Description
MILDEW RESISTANCE LOCUS O 10 (MLO10); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT2G17430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR