1. Home
  2. Mutant Lines
  3. 54-4729-1

54-4729-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23186591 [Map]; Strand: w
    Flanking Genome Sequence: 54-4729-1 - 5-prime edge 
    ATTTTGCCGT TTAGAGAGTA ACGTGACGAT CCATGGTTCA TGTTTCCCCA 
    TAAAGTCTTG CTACTGTCAA ACAGGTTTCC CATTGTTTTG AAGATAGATA 
    GAGAAAGTGA AGGTTTTAGA GAGAGAATGA AGTGAGTGGG TGAAACGATG 
    AAGAAGAAGC AAACGAGAGA GAGAGTGGGA AGTTTCTAAT GTGGTATAAT 
    TCTGTGGGTT TGAATCTCTT TATTTATAGA CAAATACTAT ATGAATTATT 
    GGCTTCTCTT TATTTTATTT ATTTTCATCT TCTTTCTATT TGTTTTTATT 
    GTTGATTGTT AACGTTTATA CGAGTTTTAT ATATTGCTAG CTAAGAGGGA 
    AAAATTATCA CAAAGAAAAT ATAATATTTT CAAAAGTGAT TAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23186475 [Map]; Strand: w
    Flanking Genome Sequence: 54-4729-1 - 3-prime edge 
    GGCAAAATCA TGCTTGCTTC CGTCATCATC CTCTTCGTCG CCGTCATTTT 
    AATCCTCTGT TTCCACAGCT ACGCTAGATG GTTATTCCGC CGTCAAAACC 
    GCCGTATTCG CCGCCGTATC AGTGCTCACC TCCGATCACT CGCCGCCGCT 
    AGAGACCCCA CCCAATCATC ATCCTCCCTC TCTCCTCTTG ATCCGACGGT 
    GCTCGAGAAG ATCCCTATCT TCGTCTACTC CGTTAAAACC CATGAATCTC 
    CGCTTGAGGA ATGCTCTGTT TGCTTGTCGG AATT

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR