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54-4375-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107309 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4375-1 - 5-prime edge 
    TCTGCAGAGA CATAGCCCTC AAGGCATCTC CGTTTTGGGA GGAGGTCACA 
    GGGACTCCTC GTTCTTGAGC TGCCTTGAAA TAGGCGTAGG GACCCCATCC 
    TTCTTCGTGG TAAGGGTTGG GGTAGAACTG ACGGTAGCAG AAGGCGGCTA 
    CAAGGGTGCC AATGAGAGCT CCTGCGAAGA CATCTTGCCA GTGGTGCCAG 
    TAGTCATCCA CACGAGATAT CCCCACAAGA CAAGCGGCAA GCAGAGGGAA 
    GATCACGAGG CAGAGTTTAG CCACATGTCC TTCATTGTTG AAGGCCTTGA 
    TTTTGCCAGA GAGGTAAAGG GAAAGGAATG TAAGCCCCGC AAAGGACCAG 
    GAAGTGTGTC CGCTCGGGAA GCTCTTGTGG CCTTCCTTGA CCTCAGCTGC 
    CTTGCCGTGG CATACCACAC CTCCCAACGC ATCATACAGC TCTTTGCCGT 
    CNGGGAAGCA GCGCCAGTAG AAGTTAGGAC GAGGGCGTCC GGTGGCTACC 
    TTGATGGAGT CAGTGATGAC ACCAGTTATC AAGACNGCGA ANAGCAGCCC 
    GAGGATGCTG TGGTGCANAT CGTACACACA TGTCCTCTTC ANGTANAAGC 
    AGACNAACAC TATGATGGGA AGAANCACAN CGTACACAGG GACAGACCAN 
    ATAGGTNCNG NGTTGTCCTT GAAAGGGNAC TTGAGGGNAG TCATNATGTC 
    TTTTCCACGT ANCGGNAAAA ANGAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107193 [Map]; Strand: w
      • AT2G01175.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -977; Region: promoter
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4375-1 - 3-prime edge 
    TCTGCAGATG GATTCAACAT CTCTCGAAAA CATGGAATCT GGCACTTCCA 
    CCGCTCCCAG ATGATCCTCC TCTCTTATTA TTTGATTCAT TATTTGGTTT 
    TTCATTTTGA TTTGGCCGTC GTCGTGAGAT TGTGAATGGT GTAGCTACAT 
    ACNTGTATGT GTATTCAAAA CTCTACTTGT ACCATTACTT TTTTGTAAAT 
    CCACTCTTCA TGAAATTGAC GTTTTTCTGG TGTCCGAGAG GCTTGGGTCG 
    CTCGAATAAT CTCGTCCAAT AGACTAATAC GGCTCTAGTG AACACGGTAT 
    TTACATGTTT GTGATCTAAA CTGAAATCAG TTATTTCTTT ATTCGTAATC 
    ATTCTTGGGT TAACATTTTC TCTTATAATC TGATGGTTGA AGATGGCAAA 
    GCCATTGTTA GCATAGCCAT AGCTGGTTCA ATCATCCACA ACACTAAATT 
    ACTCGAGCTC TCCACATGCG TAATCTCTCT TTCTCTCTAT TTCTCCCTTC 
    GTTTCTCTCA TTCTTCTTCT TCTTTTAATT TCTGGGTAGC TATTATTTTA 
    GTGTAGAACA AAGTTTGACA CTTGTGCTTA CGCACATGCG CTGCCAACTA 
    TGCTGCANGT ATTAAATCAG TTCTGAAAAT ATTGAAGCAC AACTGGAAAC 
    CGTTTCTTTT GTGCACTCAA GATATTAAAA TGGTTCTCTG T

AT2G01175.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR