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54-4236-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23119843 [Map]; Strand: w
      • AT3G62499.1 - [+] show detail - YTH family protein
        Distance: -1; Region: promoter
      • AT3G62500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G6...
        Distance: -580; Region: promoter
    Flanking Genome Sequence: 54-4236-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTAGGCACAA TATATAGCCT AAGAAGCTTT 
    TTTAATTTCT TTTTTTAAAG AAGAAAAGAG AGAGAATTGT TCAATTGATG 
    CGCAGACGTC GGATTTGATG AAAAGGAAGT TTTCGACTTG GCGCCTACAA 
    CTACTTTTTG TAGGCCTGAA AATTCACAGT CTTCCCTCAT CAGAACACAA 
    TATCTTTCTC CTCCTCTTTT GTCTTCCTTC GCCGTCGATT TTAAGGTTTT 
    ATCTTCTCCG TAGTGAAAGC ACTGATAATT TCTCCAAGGA ATTTACGAGG 
    AGGATTTGGT TTGTTTCTCC TGCGTGTTAG AGTTTTACGA TTTCTCTGTC 
    GTTTGATTTC TTAATTCTAT CCTCTGAGAG AACGAGAATT TGGTTTTCGT 
    TTTCGAATTT AGGGTTGAAG AAGCGGTTTC GCATTGGGTT TGTTGTCTAT 
    TGAGCCAATT TGCTAAAGGA ATTGAAACGT TGCGAGTTTT TGTTTCCCNG 
    ANGTCCNAAN TGCGAATCTG NNNTGNNNNA NGAAANNNNG GGNNNGGNAT 
    NNNAANT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23119848 [Map]; Strand: w
      • AT3G62499.1 - [+] show detail - YTH family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G62500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G6...
        Distance: -575; Region: promoter
    Flanking Genome Sequence: 54-4236-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGTGCCTAAG TTGTTTCTTT TATTAATTGG GTTTATATCA CGGAACCTTT 
    GTTTATCTAA TAATTCTCAT TTTTTTTTAA ATAAAATTTA AAATTTACTC 
    GAAAAAACTA TGGTACATCA GATGCAGCGT TTTCGTTTAG AGATTTTTTA 
    GATNCAAAAA ATCAAAGATA GAAAAAAAAG AATTAACAAA ATAAGATTCA 
    AAAAGAAAGG AACGTCATTA ACGAGTGCAA AATCTCATCT TTACAATTCT 
    GCAAGTTGAA AATTTTAAAT TCATGTAGTC TTTGTTGTCA ATATTCATAT 
    GATATTAGGG TGCAAATGGT TGGGTTCCTA AAGGTATAAT TTGAAAAGTA 
    AAAAAAAAAT CNTTTAANAT GAAAATTTNT AANCAGTTNT TCATTTTTTC 
    AACTCCNTTT TACATTACTT AAAAACAAGG GNGAGTTCAA AATNTTTTTT 
    TGGNTGANCA AAAAAATAAA AANGNGTCCA TNCAAATTTG TTNTTTANGT 
    TANTAAGAAA GAAAANTAAT TTTTAANCCA AAAAATCCTT NTTTTTANAT 
    TAATTNCAAA AATNCCATCG ATAAAAAATA ACTTTAATNT TTGAAAATAA 
    ATATNTAATT NTTTGTTTAN CCAAGCTAAC ATAGTAAATT TACATNTTAT 
    NTGTTAAATA AATGTTTNTC AATTCAAAAT TNTGAATTAG TTT

AT3G62499.1

Model type
Protein coding
Short Description
YTH family protein
Computational Description
YTH family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR