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54-4007-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134833 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -863; Region: promoter
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-4007-2 - 5-prime edge 
    TTTACAAGGT ATTTCAATGA TGTCGTGAAC TAGACTCATA CAATGAACTC 
    ACCAAGTCAT AAATCTGCGT CAAGCTTGGT TGCTTTAATG GTGGTATTAT 
    ATCAGTACAC ATCAGTCCTA GCGTAATGGC TTTGCNTTAA CTTGATCAAA 
    TGTTCTCCCC TCAATCTTCA TCTTCTCATC AATCACTCTC TCTAGATTAT 
    CCGGATAATG AACTCTTATA TACTCAAGAT ACCTTCTTTC TGAATCTTCT 
    TGTCCCAAAT CAGGTCTTAG ATTTGTAATC ATCTCCACAA AAAACAATCC 
    AAAGTTGAAT ATATCTGTAA TAACACAACA ACAACAACAA CAACAACAGA 
    CTTAGCTTTT ATAGCCTTAA AAAGGTTTTG ATTTTTGCAA GAAGAAGATG 
    AAGCCTTACT TGTTGACAAG TTGTTTCTAT CTCCAATCTT GAAATGAGAA 
    ATCAAAGGTT CTTGATTATC ATCGGATAAC AAAACACTGC TTGTGGTGAG 
    ATCAAATGTA ATCTCTGGCC ATTGATCTGA TAGATAACAA ATACCTTCTA 
    CAACTCCTAG AACTACTCTT AACCTTCTTC TCCATGATAA AGCCATTGAC 
    GAACTTAACC AAGTCTCAAC ATTTTCACCT TGAATCCATT CTGTAACCAA 
    AGCTCTCATG TTTCTACTAT TACACCAACC CAACACTCTT ACCAGTTCTT 
    GGGTCGNAAC TTAAAACCAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5830707 [Map]; Strand: w
      • AT1G17050.1 - [+] show detail - solanesyl diphosphate synthase 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-4007-2 - 3-prime edge 
    CTTGTAAAGC TNCCANNCCG GGCCGNATGA CCACTCGTGC TCNATATNTC 
    NNACCNGNGN CGTAANANNT CGNGTAGCNT GCATAANAGA TAAATCAGGA 
    TGNCNGTACC AAGATGTTTA TTNGNATTGA NTNNCATTGA TATAATNTCA 
    TANNGGAATA TNACCCAGAN ATNATGAGCT TTANTGACNT TCAANGTTTG 
    TCTNAGATTN GCGNNCGTNC CANGATGCCT NTGAGCANAC ATGAAATCCC 
    CAGCTAATAC AGCTACTCTT GTTCCGAATA GCTCGTGAAC CGTTTCCCTT 
    CCTAACAAAC ACAGAGAGAA AGCT

AT1G17050.1

Model type
Protein coding
Short Description
solanesyl diphosphate synthase 2
Curator Summary
Encodes a protein with solanesyl diphosphate synthase activity.
Computational Description
solanesyl diphosphate synthase 2 (SPS2); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 1 (TAIR:AT1G78510.1); Has 16766 Blast hits to 16738 proteins in 2950 species: Archae - 341; Bacteria - 9538; Metazoa - 427; Fungi - 613; Plants - 416; Viruses - 0; Other Eukaryotes - 5431 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20780.1

Model type
Protein coding
Short Description
calmodulin like 42
Curator Summary
Calcium sensor involved in trichome branching.
Computational Description
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20790.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR