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Mutant Lines
54-3979-1

54-3979-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 58766 [Map]; Strand: w
- AT4G00150.1 - [+] show detail - GRAS family transcription factor
  Distance: 0; Region: exon1 (CDS)

GTCGTGGAAG GTGGGAGATG TTTGGAGAAT GCTGTTGAGT TCAAGAGAGG 
GATCTGTGGA ATCTCCCATG ATGAGTCCGA GAATGCTCTG TTCGTGGTCA 
TGAGGAACTT GCTCCTCCCA ATCACCCAAC CCAATGGCTC CGCATTGCTC 
ATCGGTGGTG GCGTCNCCGC CGNCTCCGAC GGCGCTGCCC CCGCCGCGAN 
AGGAANACAC NGNGGCNCNA CGAGGATTGA CGCCCCCCCC GGAGAGGGGG 
NGCGTCCNCC CCCNNAACGC NGGNGANNAT NGGGGNNCTT CTTNNAAAAA 
AAATACAAAA ANNGNNCNCC CCCNCCNAAA AAANAGTNGG GGGGGGGNGG 
ACACCACNGG GGGGNGGGNN NNCGCCCCCC TTNTAAAAAA AAAAAAAAAA 
AANCCCNCCC CTTTTTNTTT NCCNCNNCNA AGGGNTTTNN NNANNANAAA 
ANTTTNNGAA AAAAAAANAN NNNNCCCCC

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 58650 [Map]; Strand: w
  - AT4G00150.1 - [+] show detail - GRAS family transcription factor
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-3979-1 - 3-prime edge
```
TCCACGACTC TGACTACTCA TCACCCGGTT TCGGAGTCGT CGA
```

AT4G00150.1

Model type: Protein coding
Short Description: GRAS family transcription factor
Computational Description: HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR