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Mutant Lines
54-3931-1

54-3931-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 22769394 [Map]; Strand: w
- AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)

TTCGGATTGA CCTTTGAGTG CAAACCCATG TCCTTAAAGA GCTTCAATGC 
TTCGTCTAAT TCGCCGACTG AGCAATAAGC GTCAATCACC GCTCCATATG 
TCGTGACAGT CGGGTCTAAC CCGTCTTCTC TCATCTGCTC CATCATTCTC 
TCAACACTCT CGAAGTCCTT GTGTTTACCG AAAAACGAAA TCAGAGTGTT 
GTAAGTGATG GAATCAGGTT TCTTCCCTTC TTTTTCCATA TCGGTTAGCA 
TCTCATAGAC TTTCTCTGTA TTATTCTTAT CACAAAACAA CCCAATAAGC 
ATGTTGTAAG CCAATAAGTC AAGAGAAAAC CCTCCTTCTT TCAGTTTCTC 
CACCACTCTA ATGGCGTCAT GATCCCGTCT AACTTGGCAC AATCCAGAGA 
TCAAAGCATA ATAGATCTTT GCATCAGGAG AACAACCAGC TTCCAACATT 
TTTTCATACC AATACATAGC CTTCTCTACA TTACTGACGC TGCAACAAGC 
ATGAATCAAT GTCATATAAG TAACCACATT CCCTTTCACG CCTTCCTTTT 
CCATATCCAT AAAGAATACA ACCGCCATGT TCAATCCATG GTGCCTGCAC 
ATCCCACCAA CGATTGTATT AACAGTTACC ACATTANGTT TAATCTCGTC 
CTCTTTCATC CGAGAAACGA CTTCTTTAGC CGTCTCAAGC T

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10376923 [Map]; Strand: c
  - AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
2. Chromosome: 3; Position: 22769278 [Map]; Strand: w
  - AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-3931-1 - 3-prime edge
```
AATCCGAACA CTGTAATATA CAACATTCTC ATAAACGCAT TTTCTAAGCT 
GGGGAATTTC GGGCAAGCGC TCTCTCTGAA AGAGGAAATG AAGATGAAGA 
TGGTGAGACC TAATGTTGAA ACTTACAATG CCTTGTTTAA GTGTCTTAAC 
GAGAAAACCC AAGGAGAGAC ATTACTTAAA CTGATGGATG AGATGGTCGA 
ACAGTCTTGT GAACCAAATC AGATCACAAT GGAGATTCTA ATGGAGCGTC 
TCTCAGGTTC TGATGAGTTA GTTAAGCTGA GGAAGTTTAT GCAAGGCTAC 
TCTGTTGCTT CGCTGACCGA GAAAGCT
```

AT3G61520.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28460.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR