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54-3838-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26463764 [Map]; Strand: w
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon7 (CDS)
      • AT5G66230.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-3838-1 - 5-prime edge
    GTGTGAGGGA ATTAGGAAGA TGAGCGTAGA GACTGACTTT GCAGGGAAAC 
    ACACTAGATT TGTGTATGAC AGTGAAGATG AAGAGATTGT GGAGGCCAAA
    GATCAATCTC CAGGAGTGTT GCNGTTTGAA AGGCTTTCCT ACACCGACAG
    GAAAACATGT CAGATTTGCC GGTGATGAAT GAGTTCAGTT TGAATCTTTC
    TTCTTGGAGT TGTGACAAAA AGCCTCATAT GTCTCGACTT TTTTTTTTTT
    TTTTTTTNGG GGGGGGNNNA AAAANNNNAA AATTNNTTTT TNNTTNNCCC
    CTNNGNNTTT TTTTNAAAAN NNAAAANGGN NNCCGNAANN AANCCNTTTT
    NNTTTTNNNN NNNNNTNNNN GGGGGGAAAA AANGGGTTTN AATTNGGGNN
    NTNNCCNANC CCNTAAAAAA AAAANCCNGN CNTTCCCCNT TTNAAAANNA
    AANNTTTTNT TTNAAANNNN NNNANTTTNG GAAAAGTNNN TTTTTTTTNN
    TTNCCCCCCC CCNNCCCTTN AAAAAAAAAA AAACTTTNGG GGTTTTTNTN
    NTTNNAAAAA AAAANCCNCG NNTTTGGGGA ATTGNNCCCC NNNAAAANAN
    TTTTTTNAAA AAAAATTTTT TTNCCCTNNN CNTTTTTTTN NNNANNAACC
    CNGGTTNNAA AAAAAAATTT TTTTTTTTTT TTAAACCCCC CAAATTTTTN
    TTTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26463648 [Map]; Strand: w
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon7 (CDS)
      • AT5G66230.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-3838-1 - 3-prime edge
    CCTCACACAA CCCATCCACA ATCCCTCCCT CTTCTTCCTC CTCTTCCTCG 
    TCGTAGTATT CCTCATCATA TTCCTCACCG TAAGAATAGG CTTCTTCCTC
    TTCATCATCA TACTCTTCGT CTTTGGCACT TGCATTGGCC TGCATCGACC
    ACACCGACGA GTTATCATCC TCTGGGTTTT GAGTCACCAC AGATGAGCAG
    TCTGAGCTCT CCCATAATTC TGATTTATCA CTAAAGTCCA GAAGCAATGA
    CCGAGTAATG CTCGGGCTCT TCTCTAACTC CAAGCT

AT5G66230.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66230.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link
InterPro Scan - TAIR