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54-3508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23363390 [Map]; Strand: c
      • AT3G63233.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1701; Region: intergenic
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 482; Region: intergenic
    Flanking Genome Sequence: 54-3508-1 - 5-prime edge 
    ATCAGAGTGT AAGACAGAAA TCACCAACAT TAATAAAAAC CAGTTGGTAT 
    ATTTATCGAG TTTTCACATC AGTATTATTT CAACTAATTT TCCATTTGTT 
    TGCAAGAAAA TGACAATAAT AACGATAGTT ATGTATTTCC GTGCATTCTC 
    TCTCAATGTA CTTGATAAAG AGGTCTTGTA ACGAAACGCG CCAGGCAGAG 
    GCGAGTGAAG TAAACGAACA TATATGAGTG GAGGGAGCTC GTCGTACACT 
    AAAGAGGATC AGATAAAAGA GTTTGTGTCT CTTTTGGATT GCCTTTAACC 
    CTACATTATT CGCCACGTCG GATATCTTTA TTTTTTACTC TTAGATTTTG 
    TCTCTAATCT CTATCTACTG TATGTTCACC GGAGCTCCCT CATTTATTTA 
    TCTAAATATA AATGATACCA ACGGTTCGTA GACTAAACCA AAAAAATATA 
    CTACGATCGA AGAGAACACA TTAATAATAT CATATCCTCT AACAAGAGAC 
    ATATCCGACG GTAGATATTT TTGTCTGAGC AACGGCGGAG ATTAGAAGGT 
    TAGGAGGACG CATATGCCCA CACTCACTTT CTCTGCCCAT CCTCCTCTAG 
    TCTTCTTCTT TTCTTATGTT TAATATCTTT TGTCTTTTTA CCATTTTCTT 
    TTCCTTTTTT TTTTTTNGNN AANNNNGGGG AAANAAAAAN NCCNTTNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23363467 [Map]; Strand: c
      • AT3G63233.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1778; Region: intergenic
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 405; Region: intergenic
    Flanking Genome Sequence: 54-3508-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGTT 
    CACAAAAATT TCGCACCCTT TTTTATTTTT TCTTTTGAAA TTGTTTTCTA 
    GGTTTAGTAT ATGATTCGGT TATTAAAAAC AAATAATTTT TTTTTTTNTT 
    TNCANGNGGG TNATNGATAN AANCATNCNT GTCTNGNCCA NAAAAATANC 
    ATANTTAAGT TTTCAANCTT AGGGAANNCC CANTNTNGNG GAAGGGCCTT 
    TNGTTTTAGG GAAANAAAAA AANCCANTNG TAAAATCNAA GGTCCAAATA 
    AANAATNTCN TTCTTCNAGT TNGACTNTTT TTTTTNGAAT NNCCANCCCG 
    GNCCGTCNNC CNCCGGGCCC CTTNAAA

AT3G63233.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63240.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2); Has 2363 Blast hits to 2040 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 816; Fungi - 600; Plants - 662; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR