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54-3499-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 228205 [Map]; Strand: c
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -2013; Region: intergenic
      • AT2G01505.1 - [+] show detail - CLAVATA3/ESR-RELATED 16
        Distance: 540; Region: intergenic
    Flanking Genome Sequence: 54-3499-1 - 5-prime edge
    GCATTAAGCA TCCGATCTTT CTTTTTAAAA CGGCCATGGA TGTAAATTCA 
    GCCTAATCAT CATATACATG CTGAGTAGGT GCCCTAAAAG TTCCTAACAA
    TATATAAAAT CGATCAAAAG TTATGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 228321 [Map]; Strand: c
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -2129; Region: intergenic
      • AT2G01505.1 - [+] show detail - CLAVATA3/ESR-RELATED 16
        Distance: 424; Region: intergenic
    Flanking Genome Sequence: 54-3499-1 - 3-prime edge
    CTTAATGCAC GACCTAAGAA GTATTTTTCA CCTAGAGTCT ACCATATTCT 
    AGCTAGCTTT ATAATATGTA GGAAAAATCG AAAATGCATG AGTTTCACCC
    AATTTCAAGT CTCTGCTTCT CCCTTTGTCA TGCTCGAAGG AGCAGTCAAC
    ACCTTCCATG TTCATGTATT TATAAATTTA TCATTTAACA ATACACAATT
    TTGGACCCAT TCAACATTGA TTTTAATAAC TTATATGTTA TATGGTTAAA
    TAACAATAAT TAATCAGTTT AACACAAAAA GACAACCTTC TTTTTCTGCA
    TAGAACATGA TCTTCGAAGA AATCCATGCA TTCGAATCTT CAACCATTTT
    TTTTTTNTNG CTTNCAATNT TAGTNTNTAA AAAAATTNCA AATTCCNAAA
    NCNTNCNGNT TTANGTAANT AANTCCAAAN CTNTTTAATC AATANTAATT
    CATNGGATCT NGANNATANC CNTNGAANCA AANGGNGTTC CANCANGNGA
    NAANCAANAT CNTTANCTNT TANCCTNNCA NAAAATTAAN CANGGNTAAG
    GATAANGATC CACNTNTCNT TATGACTAAA ACNTAAANAT NGATTCAAAG
    CAAAATNTCA NGGCAGTTTC TTGGAAANAN ACCAAACCCG TGTNGCTAAT
    NAGGGTTNNA NTTGNGAANA GGATTNGGAC CCTGGNGNGA ACTAATNTNT
    NGNNNG

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01505.1

Model type
Protein coding
Short Description
CLAVATA3/ESR-RELATED 16
Curator Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
Computational Description
CLAVATA3/ESR-RELATED 16 (CLE16); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR