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Mutant Lines
54-3246-1

54-3246-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19229675 [Map]; Strand: w
  - AT2G46780.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-3246-1 - 5-prime edge
```
CTTGGGAGAC TCAGAGAGAT ACAATGAGAC GTTACTTTGA ACAGTTTGGT 
GAAATCGTTG AAGCTGTTGT CATTACTGAT AAGAACACTG GAAGATC
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 19229559 [Map]; Strand: w
- AT2G46780.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon1 (CDS)

CTCCCAAGCT AATCCTCCAA CAAAGATTTT CGTCAACTTG GTATCTGTTG 
TATTATTATT ACCACCTTCC ATCTGAAATT GTCTCTGTTG AGCCATCTCT 
GGATTGCTTT TTCCCCAATT CACAAAACCC TAAATTCACA TCCAAAGTTT 
CAATCTTTCT CTCTCTCTCT GTTGCTTTCT TAACACAACC AAAAAAACGA 
AATTTTGATC CAAAACAGAG GAAAAAACTG TAACTTTTCC CCTCCCAAAC 
AAAGAAGAAA AAAGAGTGAA TTTGTGTGTA CCCTAAAGAG TGAAACAAGA 
GAGGAAGAGG CAAAAACCTC TGTTTTAGTA GAATGAAGGA AAAGAAAATG 
GAGGAAGACA AGAAAGCTGC TAGTGGGAAC CCACGACAAT GGGGCTATAG 
AAGAGAGAAG AGAGAAGCAA TTGAAAATAT GAGGAAAAGC CAGAGACCCA 
ATTTTACCTT TTTCGCTGTA TTTTATATAT TTATGCGTCT CTTGTGTACA 
TAAACATTTG CTTCGCTGTC TTCAACCTTC TCTCTTGATT TCTGCAAAAT 
TCTTGATAAT TAAACTTTCA TTATTATCAA AAAAATAAAA CCAAACTTTG 
ACCATTCGTC TCCAAGCATT AATAAAAATA ACTGTGAGAA TTTTTTAATA 
CATATCGAAG AGAATAATCT GCTGAATTTT TCTCTATTTT ATTTTATTTN 
GGGGTTTATT TTAAATTATT TACACTTTTT

AT2G46780.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR