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54-3223-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22772916 [Map]; Strand: w
      • AT3G61530.1 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G61530.2 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G61540.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -470; Region: promoter
    Flanking Genome Sequence: 54-3223-1 - 5-prime edge 
    AGGATAGGAT CCTTTGGGTT GTGAATTTGA AACAAAGTAT CCAACTTTCG 
    AGATTATTCA CCTGATTGGT GCTAGATTCA TAAGTACCAA ACGGCAAATC 
    GCCGACAAGA AGTGGTCTTT TGGCTCCGCG AGCAACGGGC GCGACAGTGA 
    ACAAGCATCT CCTCTAAGGA GATAGGAAGA GTGGTGTCAT AGCCATGGAC 
    AACCATGGCA GCTGAATCTC CGACGAGACA AACATCGATT CCAGCTGTAT 
    CGATGTGAAC GGCAGAAGGG TAATCGTAGG CGGTGACCAT AGTTATCGGC 
    TCACCTTTCC GATGCTTCTG TCTCAATTGC GTCAAAGTCA CTCTCTGATT 
    CGAGTTCTGC GGTTTCGGTC CTCCGTAAAC CGTGTCCTCC GGTACGTTGC 
    TCATAAACCG GACGGTGGTG ATGGCTCTCG AAGCACGAGA GCAACAACTC 
    CTGACGAGCG AAGCAGCCAT TGTTGTTGCT GATGAAAAGC GATTTTGGAA 
    TTAGTTATAA ATTNAAAGAC TTTTGGATAA ATATNTTTTC TTTTAAGAAT 
    AAAAACGATG TTGGCGACTC ACGCGCCTGG TGACTCCGAT TCCAAAGTTG 
    ACTGCTTTCG TACTCTCTCT ATCTACTACT NCATCAAGAT TGTCTGGTTT 
    CTGTTCCGGG TTNGATTGAA TTTCTTCCCG TCGCCCGGGN ANTTTTGTCG 
    TNGTAATTAN CTNCANGGNT A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22772800 [Map]; Strand: w
      • AT3G61530.1 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G61530.2 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G61540.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -586; Region: promoter
    Flanking Genome Sequence: 54-3223-1 - 3-prime edge 
    CCTATCCTAT GTTTCAGTTA ATCGCTTTGA TATCAAGTTT GTTATTGTTC 
    GAGCAAAGCA TCGATTTGGT TGATTAAGTT TTAGTTTGAA TGATGTTCAG 
    GCGGTTGATA CTGCAGTTAG GGTGTTGAAA GAAGGAGGAA TGGATGCTAT 
    TAAACTTGAA GGAGGATCAC CTTCAAGGAT CACTGCTGCA AAATCCATTG 
    TGGAAGCAGG GATTGCCGTT ATGGGACATG TTGGGTTGAC TCCTCAAGCT 
    ATCAGTGTTC TTGGTGGTTT CAGGCCACAG GGCAAAAACA TTGCTAGTGC 
    TGTTAAGGTT TGAATGTAAT GGTTCAGGCA TGTGTATGTA ATCCTTAAGA 
    GGTTATTTTT TAAAGGGGTG TGTGATAAAA TTATTTTTCT CTTATTTGGT 
    GGATTAGGTT GTGGAAACTG CTATGGCTTT GCAAGAAGCT GGATGTTTTT 
    CGGTTGTTTT AGAATGTGTT CCACCTCCTG TGGCTGCTGC TGCAACCTCT 
    GCTCTTAATA TTCCAACCAT TGGCATAGGA GCTGGCCCTT TCTGCAGTGG 
    TCAGGTTCGT TTTGATACTC TTTACATTGT CTTAACGAGA GCAATAGGCT 
    TCTTTCGGTT TCATGTGCTT ATACATGGTT TGATTGAATA AACCATATTC 
    TCAGTTATTG GCCTTTTTGC ATGATTAAAG AGTAAGATCA GCACAAAAAG 
    AGTGAGTTAT CTACATTTCT A

AT3G61530.1

Model type
Protein coding
Short Description
Phosphoenolpyruvate carboxylase family protein
Curator Summary
Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.
Computational Description
PANB2; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: ketopantoate hydroxymethyltransferase 1 (TAIR:AT2G46110.1); Has 7570 Blast hits to 7570 proteins in 2036 species: Archae - 128; Bacteria - 4151; Metazoa - 4; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 3088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61530.2

Model type
Protein coding
Short Description
Phosphoenolpyruvate carboxylase family protein
Curator Summary
Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.
Computational Description
PANB2; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: ketopantoate hydroxymethyltransferase 1 (TAIR:AT2G46110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61540.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: peptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 1602 Blast hits to 1599 proteins in 535 species: Archae - 0; Bacteria - 1162; Metazoa - 5; Fungi - 126; Plants - 75; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).
Link
InterPro Scan - TAIR