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54-3204-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 640808 [Map]; Strand: c
      • AT2G02440.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 1503; Region: intergenic
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: -7236; Region: intergenic
    Flanking Genome Sequence: 54-3204-1 - 5-prime edge 
    NTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TACTGTAATG TTTCCATGTT CTTTTTGGAT 
    CTATTATTCT CTGTTTATCG TCACTTCTCT CGTACATCCA TCTTCTGTTC 
    TGTCATGATG ATATATCTTT ACGTGTGTGT AACNTTTGTC TATACACNGT 
    GTTTTTATAT ATGGAAGTTT TTTATTGAAA GTCAACGTGT TCTAAACGAC 
    AATTTTAACT TTTTTTCTGT GTATCTCTGT ATATATAGCT TATATATATG 
    GATTCGTGTA TTTTTGTGTA TTATTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 370573 [Map]; Strand: w
      • AT2G01830.3 - [+] show detail - CHASE domain containing histidine kinase protein
        Distance: -866; Region: promoter
    Flanking Genome Sequence: 54-3204-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    AAGAGGAAAC AATGGTCAAT GCCAAACGGA TCACCTTTTT TATAAGACAT 
    TTCCCTAAAT TAACCATACA TAACAAAAAA AGGATATTTG ATATTTCCAT 
    CGACCCATTT TGTCAATTTT CAAACAATTT TTTTCAATGC ATTGACTAAT 
    AATGTATAGG GATTCACACA TTGTATTTTT GTTTTCAATT ATTTTCGTTA 
    GGTTTTAACC ATTTATGTTT CTCTAAGGTC TAACCCAAAC CCATTTGAGT 
    TAAATTTTAA TATATATATA TATATTAAAA AATAAAATAA AAGAACAAAA 
    AAGAAAATAA AATAAATTCT TTTTCCTTTA TAATATAAAG TACAAGTCCC 
    TTGCCCAATA AAATTATGCC ACATAAGATT TGTTTATAAT TTAAAGAATT 
    ATTTAAAATT TTCAACAAAA AAAAACGCTC ATTTATTTTT TTTCTACATA 
    TTTAAAAACA AAAAAATATT CCTAGATTTT CTCACACACC ACACCATTAT 
    NTTTGGAAAT TTGTAACCAA CTCAAGATTT TCCAAACCGT TTTATCTTCC 
    TCTACAAAAA TCCAATTCAC GTTAAATCTA TCTCTTGCTC TTGCTTCCTC 
    CAAAAAAAAA AAAAANNTTT CCCAAANCCC CCNNNTTNAA ANTTNTAAAA 
    AAAAAGGGGT TTNCAACCCA NNTTTTTGGN NNTNTTTTTT TTNNNGGGAA 
    NTNCCCTTTT TTCCAAAATN TTTGGGT

AT2G01830.3

Model type
Protein coding
Short Description
CHASE domain containing histidine kinase protein
Curator Summary
Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane
Computational Description
WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokine binding, cytokinin receptor activity, protein histidine kinase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02440.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02450.1

Model type
Protein coding
Short Description
NAC domain containing protein 35
Computational Description
LONG VEGETATIVE PHASE 1 (LOV1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 4817 Blast hits to 4369 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 115; Fungi - 57; Plants - 2924; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).
Link
InterPro Scan - TAIR