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54-3175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78541 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -3157; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 1892; Region: intergenic
    Flanking Genome Sequence: 54-3175-1 - 5-prime edge 
    CTGGTGACTA TGTTTTTTTC TTCAGTTTAG TGTAATAGAT TATTGTTTTG 
    TCGGGAAAAG AAACTAATTA GCAATTAATA TATATTGAAT AAAATGAACA 
    AGTTAGAAAT ATGTTATTCC ATCCACTATG TAAAGTAGTT CTGGTTTGTT 
    AGAGGTCTTG AAAAGATGTG ATGTCAAGTG AAATGCAAAA CGGTGGGNCA 
    ATTGGGCCGG AAAAGAATTA AAGTGGCCTT AGGAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 79869 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -4485; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 564; Region: intergenic
    Flanking Genome Sequence: 54-3175-1 - 3-prime edge 
    ACCACCATAC ATATATTGAG CACACCACGA AGGTGAATAT CTTATTAGGT 
    TTACTATATA TACATCTTGC TAACAGGTGG GGCAGCTTCA GTCGTCTAAT 
    TCCTTGTGAC ATGGAGAAAA GTTGATTCTT GAAACTTCAG TATCTTGGAT 
    ATTTTCTAGT TACATATTCA AGATCAATTG ATGGATGTTC TAACTAAGCA 
    CTTTCACGAG TCAAGTTTCA CGATACCAAG TCTTCTCTAA TCTTCCATCT 
    AAAAGGAGAG TTAGTATCTT TATAAATTAT AATATATCTT AGATATTTAT 
    TTTCCATACC TCTTGTGTAC ATTCTTATAG GATTTTCTTT TTGTATCTCG 
    ACCCTTTTGA ACTGTTTTTG TATTCTTTAA CAAAAAGATC AATTCAATTC 
    AGAAATCATA TAATATGTTG ATAAGAAGAC AAAAAACCAA AACGAATATT 
    ATAAGTTTTA TTGAAATTTG TAGGGGAAAC AAAAACAGAA GAAGAAACAG 
    TACATGCTAT TGTGTAAAAT GCCAACATGT CACATGTGGG CTCTAATAGG 
    AAAACAAAAC TAAAAATCGA ACGGGCCTTT TAGATGGACG TTACAAAAAT 
    GTGTTCTAGT ATATTATTAG AGATTGATGG TGAAAGGCAC NTTTGGTAGG 
    CGGTAACCAT GAAGCAGAGT CGATGAATTT GGGGTAACGT AAACTCTCGA 
    GCTTCTT

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR