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54-3109-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26018119 [Map]; Strand: w
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3109-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    ATATCCGACT CAGGAGATGA GCCCGAGTAT CCGCATCCGT ATATCTCCCC 
    AAATTCCGGT TCTTTCTCCG GTTTGGAAAA ACCAGAGAGC ACCTCCTCTG 
    TTTTGTTCTG TTTCTCGATC TGAGGCAGTG GAAGATCAGA ACTATTGCAG 
    ATGGATTCGA TCTTTGCGTT GATAGACGGA GACAATATCT GTTTATAGTG 
    TCCTTGACGA ACAATGTCTG GGAAATTGAG ACGAGCGTTG TCTCCTCTGA 
    TCTTATGAGC TGCTTGATCG TAAGCTAATG CAGCTTCTTG AGCCGTTTCG 
    AACGTACCGA GCCATAACCG GGTTCGGTTT TTAGGTAGCC GAATCTCAGC 
    TACCCATTTA CCCCATTGCC TCTGTCTTAC GCCTCGGTAT AGTTTAACCG 
    GTTTAGTTGC TACGTCGATT TTCTTCATTG AGGTTGGTTT AGCGGTGAGA 
    AGATGACTAC CAGCGCGACG ACGAGATTGG TTTTGCCGGA GATGTAACTC 
    TGTCTGAATT TGGAGGATTT GTGTTGGAGT GAGCTGGTTT AGCCCAATCG 
    GACCGGTTTG GTTAGATACC GGTAAGACTT GGTCATTATT AGGGATGAAA 
    TTAGGAGTTA ATGGTTTTGG ATTTGATGAA TT

AT5G65130.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR