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Mutant Lines
54-2520-2

54-2520-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 701420 [Map]; Strand: c
- AT2G02570.1 - [+] show detail - nucleic acid binding;RNA binding
  Distance: -503; Region: promoter
- AT2G02570.3 - [+] show detail - nucleic acid binding;RNA binding
  Distance: -503; Region: promoter
- AT2G02570.4 - [+] show detail - nucleic acid binding;RNA binding
  Distance: -503; Region: promoter
- AT2G02570.2 - [+] show detail - nucleic acid binding;RNA binding
  Distance: -503; Region: promoter
- AT2G02580.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 9
  Distance: -526; Region: promoter

GGGTTAAATA TCGCANTTTT AAAAAANGCT TAGNCGNATT TCTTAGCACC 
ACATGTAAAT ATACGTANGC AGAATATATA AATATGTGTG TAAATATCGC 
CTACATACTA GATCTATGAN TNTNNAAGAT TGACCTTTAT CTTAGCTCAA 
ACAATTCATA TAAACTTTNT TTTTNTNGCG AANANNNAGC NNTTATTNTT 
CTCNGGGANT NNNGGTCACC CNAANCAAAA AAACNGGGGG NNTTTTNNNN 
GNGGGGANTN CCNNATAAAN ANCCCCCNCN CGNNNNTNNT TTTNNGNGGG 
GGNCCTTTTT TTTTNNCCCG GGGGGGGNTN CAAANANAAA AANNNNTNGN 
AAAAANGGGN TNTGGNCCGN ANNNNANAGG GGGGNNTNGN NANNGNGNAA 
NCNCAAANGG GGNCCNNNTT NTNNGNCNTT NCCNANCCNG NNNAGAAANG 
GGGGNNNCCC NNNTGGTNGG GNGGGGGGNG NNNNCNTGGN NNNCTTNCNT 
TGGGGGGGGA NCCCACNAAN NNANTNNANN ANNGGNNNCN CCTNNTAGTG 
AATNNNNNGA NCCCCCCNCG NNNTNGNGGN ATNNNCNCNN GNNNGNCGGG 
GNGCNNNNAA GNTNNGTGNN TTAAAAAANA AANNGCCNGN NNNGGNGGNN 
NCCGCCNNNN NNNCNGNGNG GGNNNNNNNT NNNNNNNTGG GGNGGGNNNN 
NANNNNGNNN NNGNNGCCCN NGNGGAA

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 701426 [Map]; Strand: c
  - AT2G02570.1 - [+] show detail - nucleic acid binding;RNA binding
    Distance: -509; Region: promoter
  - AT2G02570.3 - [+] show detail - nucleic acid binding;RNA binding
    Distance: -509; Region: promoter
  - AT2G02570.4 - [+] show detail - nucleic acid binding;RNA binding
    Distance: -509; Region: promoter
  - AT2G02570.2 - [+] show detail - nucleic acid binding;RNA binding
    Distance: -509; Region: promoter
  - AT2G02580.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 9
    Distance: -520; Region: promoter
Flanking Genome Sequence: 54-2520-2 - 3-prime edge
```
TTTAACCCAA AAACTTATTA CATAATTGTT GAAATTTATT AATTTTATTC 
CCCTACTATA TTTACATGTG GTGCTAAGAT ATACTGACTA AGTTTATTTT 
AAAAGGCAAT ATTTAACCCA AAAACTTATT ACATAATTGT TGAAATTTAT 
AAATTTTGTT TGTGTAGTGG AGACCTAGTG GTAAATCTAG TTACTAGAGA 
AGAATT
```

AT2G02570.1

Model type: Protein coding
Short Description: nucleic acid binding;RNA binding
Computational Description: nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G02570.2

Model type: Protein coding
Short Description: nucleic acid binding;RNA binding
Computational Description: nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G02570.3

Model type: Protein coding
Short Description: nucleic acid binding;RNA binding
Computational Description: nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G02570.4

Model type: Protein coding
Short Description: nucleic acid binding;RNA binding
Computational Description: nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G02580.1

Model type: Protein coding
Short Description: cytochrome P450, family 71, subfamily B, polypeptide 9
Curator Summary: member of CYP71B
Computational Description: "cytochrome P450, family 71, subfamily B, polypeptide 9" (CYP71B9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 36 (TAIR:AT3G26320.1); Has 32361 Blast hits to 32060 proteins in 1656 species: Archae - 50; Bacteria - 3047; Metazoa - 11845; Fungi - 6869; Plants - 9493; Viruses - 3; Other Eukaryotes - 1054 (source: NCBI BLink).
Link: InterPro Scan - TAIR