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54-2034-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3054556 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1782; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6419; Region: intergenic
    2. Chromosome: 4; Position: 3055054 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2280; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5921; Region: intergenic
    3. Chromosome: 4; Position: 3055552 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -2778; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 5423; Region: intergenic
    4. Chromosome: 4; Position: 3056050 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3276; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4925; Region: intergenic
    5. Chromosome: 4; Position: 3056548 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3774; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4427; Region: intergenic
    6. Chromosome: 4; Position: 3057015 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4241; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3960; Region: intergenic
    7. Chromosome: 4; Position: 3058011 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5237; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2964; Region: intergenic
    8. Chromosome: 4; Position: 3058509 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5735; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2466; Region: intergenic
    9. Chromosome: 4; Position: 3059007 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6233; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1968; Region: intergenic
    10. Chromosome: 4; Position: 3059505 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6731; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1470; Region: intergenic
    11. Chromosome: 4; Position: 3060501 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7727; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 474; Region: intergenic
    12. Chromosome: 4; Position: 3060999 [Map]; Strand: c
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-2034-1 - 5-prime edge
    CATGTAGGGA TACCCCATCT AGTCTTAACG AGCTTTGATG CATGAGAAAT 
    ATTCGAAAAC AATGCTTGAA AAAGTAATTT TGGGTCCGTA ATATAGCACA
    AATCACGAAA ATGCCCAGAA AAAGTANTTA AAGGTCAAAA TTTGGAGTCG
    AACCAACCCG GGCCGAAAAC CACNTCTGTG CCTGNTTTTT TTGTCGGNNG
    GNTCTNTTTG GGCTTTNCCA AAAGGGATTA NATGCCNANN TTGGGCNNAC
    GGGNTTNAAN TTATTGANNC NTNAAGGTTT NACCCANNNA AAAAAAAAAN
    NGGGGGGGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3054672 [Map]; Strand: c
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1898; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6303; Region: intergenic
    2. Chromosome: 4; Position: 3061115 [Map]; Strand: c
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-2034-1 - 3-prime edge
    CCTACATGGC GGGTGGGACC CACGGCGAAC GGTTCATCAA GACTTAAAAA 
    AAGAATATAT ACGATTGCAT TGCATATACT AACGGATGCG ATCATACCAG
    CACTAATGCA CCGGATC

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR