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54-2031-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71610 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-2031-1 - 5-prime edge 
    CCGGTGATTC CTGCAATGTT ACAGGTTCTT AAAACCATTT CTTCTTTCAT 
    TCAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71726 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-2031-1 - 3-prime edge 
    ATCACCGGGC AAGACAACAC CAGTGTTAGG ACGAACACAG TATTTGCGAG 
    GATTGGTTGT TTTAACCTGT GTGTCTCTCA ATTAACATCA ACACTCTCTC 
    AATGTGTACT AATAAGACAG AATTGTAAGA AGAGAATGTA AAAGACCTTA 
    AAAGCGACAC ATTGAGTAGT TGTCTTGTTG GTCAATTGCA TCGAACACGA 
    ACTTTGTTTC TTCAACTCAA CTTCTCACCA CCAACAACAA CACAAATTAT 
    AACAGAGGTT ACCCAAACAA ACAACGACGG TTCAATTCGG AGAATCGAAA 
    ACGTAAAAAA GGTGAAATGA ATCCGAGAGG GATCAAATCA ATCGGAAAAA 
    AAAANCTTAC AGGGGAATTT AANCTCAGTA GGATGGATNT TAACNANATN 
    TCCGGTCGTN ATGCTTNTTT GTAAATCCTT CNANATTGAA ATTGGATTTT 
    TCTGTTTTTT TTNAGGGTTT NCAACTGNGA AAAAAAAAAT GAAANTCGAN 
    CAANTTTTGN TTTTGGNCAA AAAAAAAAAA AAGNGANTAA ATTTTTTTTT 
    GANCCAAAAC NGGTAAATTT TTGTAGTTTT AAATNTTAAA NGCCNCGTAA 
    CTANATTTGA CAATCNCCGA TNGACCGGGA TTTTTTTAAT GCGTTACCGG 
    TAAGCCCAAC AAAATCAAGG CTNTTGTTCC CTGACTGAAA TAAGCCCACC 
    AAAAAGGATC NCCC

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR