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54-1970-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 681262 [Map]; Strand: c
      • AT3G03010.1 - [+] show detail - Peptidyl-tRNA hydrolase II (PTH2) family protein
        Distance: -657; Region: promoter
      • AT3G03010.2 - [+] show detail - Peptidyl-tRNA hydrolase II (PTH2) family protein
        Distance: -660; Region: promoter
      • AT3G03020.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT3G03020.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT3G03030.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: -792; Region: promoter
    Flanking Genome Sequence: 54-1970-1 - 3-prime edge 
    GAANACGGNA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATAAATT 
    ATCAGAAATG GCAGGCAGTA ATCTTCTCCA AGGTATACTC TATTTATTCT 
    TCTTCTTTGA TGGTACTACT ATTTGATCTG ATCTATTTTG AGTTCATTTT 
    TCTCTAGTTT GGACCTGGAA TCAGTTTCTC TCTTGTTAGC TATTTCTCTC 
    TTCTCTATTG TATGAAATCA AATCCAAATC TATTTTGCTC TTGAAGACAA 
    CCTAAAGCT

AT3G03010.1

Model type
Protein coding
Short Description
Peptidyl-tRNA hydrolase II (PTH2) family protein
Computational Description
Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 884 Blast hits to 884 proteins in 331 species: Archae - 257; Bacteria - 13; Metazoa - 196; Fungi - 135; Plants - 86; Viruses - 8; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03010.2

Model type
Protein coding
Short Description
Peptidyl-tRNA hydrolase II (PTH2) family protein
Computational Description
Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03020.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03020.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03030.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G03040.1); Has 1867 Blast hits to 1823 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1867; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR