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54-1938-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16137471 [Map]; Strand: c
      • AT4G33565.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G33580.1 - [+] show detail - beta carbonic anhydrase 5
        Distance: -888; Region: promoter
      • AT4G33580.2 - [+] show detail - beta carbonic anhydrase 5
        Distance: -889; Region: promoter
    Flanking Genome Sequence: 54-1938-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC NGCCNGNCTA CTGCTGGANA GAANCNCATG TGACTNNCNG 
    CACATNGNAN TCTAATNGNA ACANNATTGG ACCTATATGG AGAGCATGTC 
    GNGNCNGGGC GATNATGAGN ATNTGNANGC CGNTCGGCTC CGGNTCANNC 
    NCACAANTGN CTAGNNAATT GCTTACNANN TNGGTCGTGA TGCAAGTTGG 
    TGACACTTCT GAATCCGTAT TTGGAAANAC TGATCACTAA NTATCAANCC 
    ATNNCCNGAN ANNCAGATCC GCNATNATNT NTGANTCNGA GAGANTGATG 
    ATGATTNTTN CATANAATAT CGGNAGNATC CNAGNNGGTG GGGANNNACN 
    TNGGCNANCA AAANTACCAN CCNNGGCCGG ACACNACNCN GGACCATATA 
    GATGAACAAT ATCCTAGAGT TTTCAACTCT TGGATGCAAT TATTTTTACA 
    GAGAGAGTCC GAAAAGGTTT CTTTGGGCAT ATCCTCCAAC AGAAATCTGT 
    GAAGGAACCT CATGATCCTT GCTTCAAGAT CATCAATCAA CAAGCAATGG 
    AGAAAGAGGA AAAAGAAAGA GAATAGAAGA TGAGAGTTGT CTTCGTTTTT 
    GTTCTCTCTC TTTTGCTTTC TTTCTTTAGA ATCAAGTTTG GTCAACAAAA 
    GTAGGTTGAC GGTATCTATC ATCCTAATTT CACCAAAATA ATTGATTTTT 
    AAATGTTGGT ACAAAATAAA AATTATAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22767009 [Map]; Strand: w
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1279; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1908; Region: intergenic
    Flanking Genome Sequence: 54-1938-1 - 3-prime edge 
    GATACAGCAA GACGAAACAC TGATCAAAAG TTACAAAACC GCCCAAAGAT 
    TAATGTAGAG ATACATTCCC TACAAATACA CTCTAAGAAA ACGAGTAATC 
    ACTCCACTTA GATACATACA GCGTGTCCAT CTAGTTTTAG TCTTTTCGAT 
    CTCCGACCAA TTCAATCTAA GGCAAAGATT AATGTAGAGA GAGTTTTACT 
    ATGTCGTAAA TCTAGAAAGC CGCCCAAAAA GATCTTTGAT CGCCAATTCA 
    GTGGGCTGCT CCACGGGTCA ATACTTTTTC ACATGTTAAT TTTGTTGGAT 
    TACTATAAAC ATAATGAATG ACCTTGAAGA ACTCTTTGGA GCTAAACCCA 
    ACGACCAACC CATTACGGCA TTACCATTCT CTCTACATGA TTTTCTTCCT 
    CTTAAACTAA TTTAAAATGG AGAAAGACAA AATTTGAAAT TTTATTTTCA 
    CGTGATTAGA CCATGATTAC GTTTCGGTCG ACACGCAAGT AATTTTAAAA 
    CTTAAAACAT ATGATTTGAA AAAGGTAAAA CACCAAGTCA TGGTAAACTG 
    ATAACTTCCG TTTGAACCGT TTCCGGAATT AGCACCTCCG ACAATACCGG 
    CTTAAACCAG AGGAACTACG AATTAGACTG AGATTTCAAT CAAACCGGGG 
    TATCCCGGTT TAGCTTGTTA ATGGGCCAAA ATAAGGAGGT CATTTGCCGA 
    CTTTAGCCCC GAAGTAGGGA GACCGTCTA

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33565.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 9700 Blast hits to 9677 proteins in 303 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 776; Plants - 5096; Viruses - 103; Other Eukaryotes - 1362 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33580.1

Model type
Protein coding
Short Description
beta carbonic anhydrase 5
Computational Description
beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33580.2

Model type
Protein coding
Short Description
beta carbonic anhydrase 5
Computational Description
beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR