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54-1751-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16137450 [Map]; Strand: c
      • AT4G33565.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G33580.1 - [+] show detail - beta carbonic anhydrase 5
        Distance: -909; Region: promoter
      • AT4G33580.2 - [+] show detail - beta carbonic anhydrase 5
        Distance: -910; Region: promoter
    Flanking Genome Sequence: 54-1751-2 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA CACCATCTTT TTTACTATAC TGACAAACTT
    TGATGGAACT TATAACCGTT GGATTCAACC CTATGGTTCT GATATGCCAA
    ATCGGATGAT CAACAATAAC AGGTGCTGGT CCATCAAAAT CCCAATTCCT
    AGCTTCTTCC ATACTCCATC TTCTTGATGT TGTTATTGAT CTTCTCCTCC
    TATAGTAAAA CTTGAAGCAG AGAACAAGTA AAGTAAGGAG AAACAGAGTT
    GTGATGATAG ATGAAGCAGA GATGATCAAG ATCCTCTTTA AGTTGTCGTC
    GTGGTGGATC TCTGCAGGTG GTGAAAGACC TGAAATTACG ACGATCTCGC
    AGATGGAAGG ACACTCGTCA AGACAATAGG ATGAACAGTA TCCTAGAGTT
    TTCAACTCTT GGATGCAATT ATTTTTACAG AGAGAGTCCG AAAAGGTTTC
    TTTGGGCATA TCCTCCAACA GAAATCTGTG AAGGAACCTC ATGATCCTTG
    CTTCAAGATC ATCAATCAAC AAGCAATGGA GAAAGAGGAA AAAGAAAGAG
    AATAGAAGAT GAGAGTTGTC TTCGTTTTTG TTCTCTCTCT TTTGCTTTCT
    TTCTTTAGAA TCAAGTTTGG TCAACAAAAG TAGGTTGACG GTATCTATCA
    TCCTAATTTC ACCAAAATAA TTGATTTTTA AATGGTTGGT ACAAAATAAA
    AATTATAAGC TCCAGCCCNG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16137459 [Map]; Strand: c
      • AT4G33565.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G33580.1 - [+] show detail - beta carbonic anhydrase 5
        Distance: -900; Region: promoter
      • AT4G33580.2 - [+] show detail - beta carbonic anhydrase 5
        Distance: -901; Region: promoter
    Flanking Genome Sequence: 54-1751-2 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GAAGGAACTG ATTGCTCCGT TTGTTTAAGC GAATTCGAAG AAGAAGAGAC
    GCTTAGATTG TTACCAAAGT GTAAACATGC TTTTCATCTT TATTGTATTG
    ATACTTGGCT TAGATCACAC ACCAATTGTC CGCTTTGTCG TGCTCCTATC
    GTTGAGGCCA ACACAATGAT TGATGATCAT AGTGAGGGGC TAGAGGAGAT
    AAGTGTGATG ATTCCAGAAG AAAATGGAGA TGATACCGAT GAAGAAATCG
    AGGAAGAAAG AGATGGCTTT GTTAGTAATG TTAGTAGAGA TCATGGTGAG
    TCACAACAAC AGCGAGTGAG ACGATCAGTG TCGTTGGATT CGTTATCGGG
    TTTAAGGGTA AGTGAAGTTG TTGTGGGTAG AGAAAAGGAG AAGTTGAAGA
    GAGGCAACAA TATCGGATCT GGGAGGTCAA GTTTATTGAA GAGATC

AT4G33565.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 9700 Blast hits to 9677 proteins in 303 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 776; Plants - 5096; Viruses - 103; Other Eukaryotes - 1362 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33580.1

Model type
Protein coding
Short Description
beta carbonic anhydrase 5
Computational Description
beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33580.2

Model type
Protein coding
Short Description
beta carbonic anhydrase 5
Computational Description
beta carbonic anhydrase 5 (BCA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: beta carbonic anhydrase 6 (TAIR:AT1G58180.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR