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Mutant Lines
54-1362-1

54-1362-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 280739 [Map]; Strand: w
  - AT4G00680.1 - [+] show detail - actin depolymerizing factor 8
    Distance: -40; Region: promoter
  - AT4G00690.1 - [+] show detail - UB-like protease 1B
    Distance: -574; Region: promoter
Flanking Genome Sequence: 54-1362-1 - 5-prime edge
```
ATANGGAAGA GTGAGGAGGA TTGGGGGGGT TTATGAGGTT GAGGAAAAAC 
ACAAAAGTTG GGTAATATTC TTTTGGTCTT TACGCTGATC ACGTCTTGAA 
GTANATGACT TTGATGCTAT CACNTCNTGC CCATTTTTTT CAAACCTATA 
TNTTTTTTTA ATCCTTGATA ATACATATAA ATCTATATTT ATTTGTGTTT 
GTTGCATATG AGCTCAACTT TGGTCGGGAG ATCATTGGAC CGTTGAAGTT 
TTCAT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 280623 [Map]; Strand: w
- AT4G00680.1 - [+] show detail - actin depolymerizing factor 8
  Distance: 0; Region: exon1 (5UTR)
- AT4G00690.1 - [+] show detail - UB-like protease 1B
  Distance: -690; Region: promoter

TTCCCTATCC TCTTCATTTT TCCCAATCAT CAAACACAAG ATTAGAGTTC 
GATTCTCCAA AGAAAATATG GTAAGTTCCT ACATTTAATC TTCTGATGTA 
GATGATGATG ATGCATTGAT TCTGTTTATG TTCTGATTGT CAACATGTGA 
AATTTATATG TGGATGGTGT GGTTGAATAT ATATGGTTTN GTGTTATTTG 
GTTTGGAAGT GTAACACATG AATAGGTTTC ATGTATATAT TGACTTCATT 
AAGAATGATG TTGTGGACAT ATGGTTTATA TGCCTATGAT CCTAAATCAC 
AATCTAAAGT TTTATGGGAA CTGGGTTAGG AAGATGTATA NAATGGGAAA 
AAGCCTTAAT TGNTAAATAA ANGACNACGT GTGTGTGTGT TNTTTTTTTT 
NGNCNCGCTN ATTNCCCCCC TNNGGNCCNT GGTAAATNNT NANCNCCNNA 
ATNNCGNTNT TNNNGGTGAA AGCNNGGNGG GCCCNCGGGG NNCTNGGNTC 
CNAACNCCTN GAAGGGNCCC CNNCCCCCCC AANNAAAANC CNNTGGGNNC 
CCCAAAAAAA NTTTCNANAA ATTTCCCCCN CNTTTTCCGC CCATAANANA 
AAGGGGAACN CCCCGNCNNN CNATTNTGNT GNTTTCCCAA AANANGNCCA 
NNNNNGCNAA NAATAAAAAT NAAACNCGCC NGGNGGANTA NGTACCGNGN 
TTNCNANANN ACAGNTCNNA TNCNNTNNNC TGNCNNNNNN ANNGNNTANC 
AANTTAGNAA TNTNG

AT4G00680.1

Model type: Protein coding
Short Description: actin depolymerizing factor 8
Computational Description: actin depolymerizing factor 8 (ADF8); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 11 (TAIR:AT1G01750.1); Has 1612 Blast hits to 1604 proteins in 270 species: Archae - 0; Bacteria - 5; Metazoa - 759; Fungi - 157; Plants - 515; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00690.1

Model type: Protein coding
Short Description: UB-like protease 1B
Computational Description: UB-like protease 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1373 Blast hits to 1372 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 267; Plants - 349; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).
Link: InterPro Scan - TAIR