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54-1270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 56097 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -7747; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 2608; Region: intergenic
    Flanking Genome Sequence: 54-1270-1 - 5-prime edge
    TCTGCTACTC CACTATGGCC AGGATGCCGA GAGTTGATTT ATTACAGATC 
    TTAAAGCGAA TTCCGTATTG AGAATGCAAA CTTTATTTTT ATTAAGTGGT
    ATAGCTGCAT CCTTACGAAG GATTGCCTAC GTACCCAGTT AGGGATCAAA
    CCATTCNTNN TTCAAGTTCT AATGGAGAGG TCGGATTACC GAGCTCGTGT
    T
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 55985 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -7635; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 2720; Region: intergenic
    Flanking Genome Sequence: 54-1270-1 - 3-prime edge
    CTTCGATGCG CGTCTCACAT GGATGCAGTG GTGAAATAAT CCACGCCCTA 
    TTAGAAACTT AATTTTTCTA ATAGGGATAG CCGAGACCAG TTTTCTCGCA
    CTTAAGCTCT GGTTCGGACA GAAATATAAG CCGAACCCTG TATTTCGCGA
    TCTGCCGAAC AGATGCTCTN NNGGGAGTAA GCCGAGCCCA GCATCTCGCT
    CCCCAACTAA TATGCTGAGT CCGCCTCACT T

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR