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54-1066-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20634704 [Map]; Strand: w
      • AT5G50720.1 - [+] show detail - HVA22 homologue E
        Distance: -152; Region: promoter
    Flanking Genome Sequence: 54-1066-1 - 5-prime edge 
    NGTNAGNCNA AACNNTGANG ANTNGTNNTN TANANTNANN AACCAAACCG 
    ATGANNNGAA TTGTTCTCTT CTNGAGTAAT CNACTAATCA NTATACTTAG 
    TCCGGTTTAA CGATCGGTTT GGCGTTTGTT TAGTGTCCAN GAGTNTTNNT 
    GACNCNTCGG CTGTAAGAGA CAAAGAGTAT CAGATTCTAA CTTGAGCGTN 
    TCCGACATGT CACCGGCCAA TGAAAGCCAG ATGTCGGTGA GATTCTCTTT 
    ATTGTGATTT TTCATGCTTT CTTGATATTT ATCATTAATT CATAAAACAG 
    TGTAAACTTT CAAGTATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460960 [Map]; Strand: c
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -192; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -217; Region: promoter
    Flanking Genome Sequence: 54-1066-1 - 3-prime edge 
    GTNGNNNNNN GGGGAGAANN AANGGNAANN NAANNANNNA AATTNNAANN 
    NNNATTGAAA NNGNNANAGT TTTTACCGAC CGTTACCGAC CGTTTTCATG 
    ANTNCCCCAT CCNATCTCCT TTAAAAATTA AAAAAAAATT GGATTTATTT 
    CTTTCCATAA AAATGAAAAA GTTGTAAATT ANAGACTNNA TTAATCTTCA 
    TGGACCTTAA TTATNAATNA ATGNCAAAAA AATGAAACTA GACTTGNGTT 
    GGNCTTCCTC GNNGCCCATG CCGCTGCCTT CCGNGACGCC NCTCCACGTC 
    GGA

AT5G50720.1

Model type
Protein coding
Short Description
HVA22 homologue E
Curator Summary
Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.
Computational Description
HVA22 homologue E (HVA22E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue D (TAIR:AT4G24960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66220.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 378 Blast hits to 377 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66230.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link
InterPro Scan - TAIR