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54-0883-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433531 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -433; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -533; Region: promoter
    Flanking Genome Sequence: 54-0883-2 - 5-prime edge 
    GCTGGCTAGC ACCGGCGCGC ACACGAGACC TGGAAAGAGT CGTGGAAGAT 
    AAAGAAAGTT CCCCAGGTTT AGACTTTGCA GAAGCCACAG GGAAAAAAAT 
    AGTTGGTGGA GCAATAAAGG CACNGGCTTT GAAAGGAGTT GAGATTCTTG 
    GAGGCGGCGA CGTTGGAAAG AGAAATGGTG TTGGCTGCCA TGGAAATCGA 
    TGCGGATCAG AAGTCGGGTT TGGGGAGAAG AGAGAGTTGA AGAAAAGAAA 
    TTGGGTTGGT GAAGAAGAAG AAGACTGAAT TGAAAAAATA CATTAGAGGA 
    TTGATTTCGT GGTGTTGTTT GGTGAAGCCT TCGGAGACGG CGTGGGGTAG 
    GGTGGTGGTC ACTCTCTCAG GCCATTGGTG TAATCTCCTA CAACTCACCC 
    TACGCTAAAA CAGGTTATTT ATTTTACTCA CGTGAGATAG GCGGTCTAGA 
    TATTGACACG TCACGTAAAG ACCTCACTAC TTGTCTTCTC ATGTACACCT 
    CGGATAAAAA CGATGCCGTT TGATTGACCC GCGAAAATAT CGAGCGATGA 
    AATAGTCATT TAGTGGAGCG AGCCAACACT CACTCCTCAT TTCGAGACAA 
    AAACGCGGAA GGCGACGACA CGCCGTTGAG GAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433415 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -317; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -649; Region: promoter
    Flanking Genome Sequence: 54-0883-2 - 3-prime edge 
    TAGCCAGCTC ATGAACGAAC CGCTTAACGA TCAACGCTCC ATCTCTTCTC 
    CCACTGTCGT CGAGGTTGAT CTTGGTGACC GGAGTTATCC GATCTATATC 
    GGCGCCGGCT TGCTTGATCA CTCAGAACTT CTTCAAAGGT TTCATCTTTT 
    GTCCCATAAG ACCATTTCAT TTTAATTTAG TTTAGCTTTT TGAGCTTTAA 
    TTGTCGCCAC CATCAAACGG TCGAGTTTTG ACTTCTCTTT AAGCGATAGT 
    ATCGATTTAG TAAGGTGTTG ATGTCGTTGG AGATGACTAG TGAGCTTATT 
    TAGGCCAATG GTTTTTGTTT AAAAAAATTT CAGAGCACAT ACAATACTCA 
    AGTTTTTTAG AGTTTGGTCT TGCATAATTT GTTGATAAAT GTTTAGGCAT 
    GTTCACGGAA AGAGAGTGCT TGTGGTCACC AATGATCGAG TTGCTCCTCT 
    CTACCTGGAC AAGACTATAG ATGCTTTAAC CAGAGGAAAT CCAAACGTGA 
    CAGTGGAAAG TGTAATTTTG CCTGATGGAG AGAAATACAA GGACATGGTA 
    CATGTTATCT TGGATTTTGA TTTCCCTGTT TATAATAAAG AATCATTAGT 
    AATCGTGAGT TATTGAGACT CTTTTATTCT TTCTAGGATA CTCTCATGAA 
    AGTCTTCGAC AAGGCCATTG AGTCTCGCCT AGATAGACGA TGTACATTTG 
    TTGCCCTTTG GAGGCGGTGT GATA

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR