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54-0596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16286841 [Map]; Strand: w
      • AT5G40670.1 - [+] show detail - PQ-loop repeat family protein / transmembrane family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-0596-1 - 5-prime edge 
    AGCGTGGGCC TCAAAAAGTA TCCAGACTTG CGATAGGTAT TGTGGTTGTT 
    GTGTGGGGAT TTGCAGCTAT CTGTTTCTTC ATAGCATTAC CTACACACTC 
    TTGGCTATGG CTCATTTCAA TCTTCAAGTA AGTTGTTGCG CAAAGCCTTC 
    TGAACCAATT CTTTTAGTGG TAATCTAACA GTTTTGATGA TAATGGTTTA 
    TTTGTTCATT GTTATAGTTC GATTCAGGTC TTCATGACAT GCGTCAAGTA 
    CATCCCACAG GTCAGAAAAG ATTCCAAACC TTAATTTTTT TCATTATTGA 
    TTGAATCTGC ATTACTCAGA TTTTATGTGT TTGCTTCACA GGCAAAGATG 
    AACTTCACTA GGAAGAGCAC AGTCGGGTGG AGCATCGGGA ATATTCTTCT 
    CGATTTTACT GGAGGACTTG CTAACTATCT GCAAATGGTT ATACAATCTA 
    TTGACCAAAG TAACAATCTC TTCTCTATCA CATCAATAGC TTTTGTTTTC 
    TCTGATAATA ACATTTTGAA AGAAAACTTA AACTATCTAT TTCCTTTGGT 
    TCTTCCAGAT TCTTGGAAGA ATTTCTATGG GAACATGGGA AAGACTCTTC 
    TCTCACTTGT AAGAAAATTG ATGGAGTGTT TTTTTTTGGG TCAATTCTCT 
    CTCTCTCTCT AANAACGTNT NAAATGGTTT TAACAAAAAT NAATNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16286773 [Map]; Strand: w
      • AT5G40670.1 - [+] show detail - PQ-loop repeat family protein / transmembrane family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-0596-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CGCTGCGAGA GTAAATCACT GGAAACCATC AGGAAAAAAA GAACACTTGT 
    ATGGGATAAA GAGACAAAGG CAAGCCTAAG AAACATGATT ACTCACTTCA 
    TAGATAAATA TCTGGAACAG TGTAACAGCT GTCATTACAA CTGCATGGAT 
    CGAGAATGCA ACATCATTTG CAGCCACAGG TATCATCTGA AATAAGCAAC 
    AATTATAACA AAACGTCTCA AAAACTAAAC CAGCTCGAAC AATCTAAAGC 
    T

AT5G40670.1

Model type
Protein coding
Short Description
PQ-loop repeat family protein / transmembrane family protein
Computational Description
PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR