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54-0518-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26434233 [Map]; Strand: c
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -455; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0518-1 - 5-prime edge 
    ANAAANNATA NNNCGNCANN NNNANNAAAA AAAAAAAAAA AAAAAAAAAA 
    AANGNNTTTN TANCCGGGNC AAAANCGGNT TTTCGATAAC GGTCGGNACG 
    GGATTTTCCC ATCCTACTTT CATCCAGNCN AACGGAACTT GNTCACTCNA 
    NTAAACTCTC TCAGCAACGA TCCCCAATTC CCAGATGAGC AGGAAACTTN 
    CGAGTAGTCG GATNACGAGC NCCGGGCCGN NNNCCNCNCG TGCCCCNACC 
    GATTNCTGNT ANTATANTTN ANACAAGAAN NANAAAAAAN ANNNATCAAC 
    TCGGGNNTGN GGGCNANNGN ANNNAAANNA ANNAATAATA ATNAATNACA 
    AGANGANANN GTTNNACATT TNAAGANAGA NNNCNAGNGG GGNCNNTTTN 
    CCCTANGAGN GNNGAGAGAG AGTGANNGAG CGACNTNTCT NNNCCNAGAT 
    ANGGNGAGCA CGCGGTNANA GCNATANANG NNTNAGAACA AAGACGAAAT 
    CTCCAAAGNN AGNGGNGCGC TNNNAGGAGA NAANAAAAAG AGANANAGAG 
    GAANANACAG CNTCGNTNNN CCGAAAAAAG AANAANCNCN TCAATNCAAT 
    NGTTAGCGNA NTANNCGNAC ACAGNGAGAA TNGAGGGTNG ANNGNNATAN 
    AGGTAANNGN GCNAGAACCC NNGNNNCACA NNNCANCNCG GNNCGGNNAT 
    ANACACAANN ANCACAAANC ACCCCANACN ANCCGNGTNT CNAANAGAAC 
    GGNCANCNGN GNANNCGNGA GNCCCCGNCG NAGAAGTCNA NAGAAAAAGN 
    GGNAACAGGA TAGAACGAGA NNANGGANAT ACTGAGANCA TANNTNNGAN 
    CAAATACGGA CTGTTANANN AAGCNGGNNA NNGGGGGGAN AANGTNNNTA 
    CGNNGAGNNN NNAANANANN GTAGGGGGGA ANANACANAG TAGNNGAGGA 
    TCANCNCNNC GTNNGGGGNT GANAGNGGNN AGCAGCNGAC GGG

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR